miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28911 5' -54.3 NC_006146.1 + 170103 0.76 0.484873
Target:  5'- -gCCGGCGcCGCAGGGGggGCcgGCGGg -3'
miRNA:   3'- caGGCCGU-GCGUCCUCuuUGugUGUC- -5'
28911 5' -54.3 NC_006146.1 + 48226 0.68 0.91044
Target:  5'- -cCUGGCGCGCcuGGGuGAGcgcCGCGCGGa -3'
miRNA:   3'- caGGCCGUGCG--UCCuCUUu--GUGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 59040 0.67 0.927014
Target:  5'- -gCUGGCggugaggGCGCAGcGGGccGACACGCAGg -3'
miRNA:   3'- caGGCCG-------UGCGUC-CUCu-UUGUGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 170666 0.66 0.962587
Target:  5'- -aUCGGCGCGgGGGAGGccaggGGCGCccCGGg -3'
miRNA:   3'- caGGCCGUGCgUCCUCU-----UUGUGu-GUC- -5'
28911 5' -54.3 NC_006146.1 + 169983 0.75 0.552962
Target:  5'- -gCCGGCGCGCgcccggggucccgGGGGGcgGCGCGCGGc -3'
miRNA:   3'- caGGCCGUGCG-------------UCCUCuuUGUGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 167307 0.74 0.625695
Target:  5'- -gCCGGCGCcuGCAGGGGggGCcgGCGGg -3'
miRNA:   3'- caGGCCGUG--CGUCCUCuuUGugUGUC- -5'
28911 5' -54.3 NC_006146.1 + 169171 0.74 0.625695
Target:  5'- -gCCGGCGCcuGCAGGGGggGCcgGCGGg -3'
miRNA:   3'- caGGCCGUG--CGUCCUCuuUGugUGUC- -5'
28911 5' -54.3 NC_006146.1 + 51982 0.72 0.737679
Target:  5'- cUCCGGCAUGCGGGccGGGCGCGuuuCGGa -3'
miRNA:   3'- cAGGCCGUGCGUCCucUUUGUGU---GUC- -5'
28911 5' -54.3 NC_006146.1 + 150550 0.69 0.846518
Target:  5'- --gCGGCcaggAgGCAGGAGA-ACACGCGGa -3'
miRNA:   3'- cagGCCG----UgCGUCCUCUuUGUGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 125778 0.68 0.909832
Target:  5'- uUCUGuuucaACGCAGGGGAAgaggaagGCACGCGGa -3'
miRNA:   3'- cAGGCcg---UGCGUCCUCUU-------UGUGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 65898 0.69 0.869821
Target:  5'- -gUgGGCACGCugauGGAGAAAUGgGCGGu -3'
miRNA:   3'- caGgCCGUGCGu---CCUCUUUGUgUGUC- -5'
28911 5' -54.3 NC_006146.1 + 53945 0.69 0.838346
Target:  5'- gGUCCGG-ACGCAGGGGcu---CACGGg -3'
miRNA:   3'- -CAGGCCgUGCGUCCUCuuuguGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 167187 0.75 0.552962
Target:  5'- -gCCGGCGCGCgcccggggucccgGGGGGcgGCGCGCGGc -3'
miRNA:   3'- caGGCCGUGCG-------------UCCUCuuUGUGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 43532 0.69 0.869821
Target:  5'- cUCCacgaggGGCGCGCgcaagaagcaguAGGAGAcgcGGCACGCGGu -3'
miRNA:   3'- cAGG------CCGUGCG------------UCCUCU---UUGUGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 168119 0.75 0.552962
Target:  5'- -gCCGGCGCGCgcccggggucccgGGGGGcgGCGCGCGGc -3'
miRNA:   3'- caGGCCGUGCG-------------UCCUCuuUGUGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 130279 0.71 0.757187
Target:  5'- aUCgGGUaACGCGGGAGAAGCA-GCGGc -3'
miRNA:   3'- cAGgCCG-UGCGUCCUCUUUGUgUGUC- -5'
28911 5' -54.3 NC_006146.1 + 159958 0.68 0.895857
Target:  5'- cGUCCcugugguaggagguGGCGCGCAGGAGc--C-CGCAGu -3'
miRNA:   3'- -CAGG--------------CCGUGCGUCCUCuuuGuGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 48015 0.67 0.922089
Target:  5'- ---aGGcUugGCGGGGGAGGCACgGCGGg -3'
miRNA:   3'- caggCC-GugCGUCCUCUUUGUG-UGUC- -5'
28911 5' -54.3 NC_006146.1 + 169051 0.75 0.552962
Target:  5'- -gCCGGCGCGCgcccggggucccgGGGGGcgGCGCGCGGc -3'
miRNA:   3'- caGGCCGUGCG-------------UCCUCuuUGUGUGUC- -5'
28911 5' -54.3 NC_006146.1 + 168239 0.74 0.625695
Target:  5'- -gCCGGCGCcuGCAGGGGggGCcgGCGGg -3'
miRNA:   3'- caGGCCGUG--CGUCCUCuuUGugUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.