miRNA display CGI


Results 1 - 20 of 350 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28912 3' -65.6 NC_006146.1 + 117129 0.66 0.499264
Target:  5'- aGGCccucGuCCGGCGagaCCUCCGCCcGCCGCc -3'
miRNA:   3'- gUCGu---C-GGUCGCg--GGGGGCGG-UGGUG- -5'
28912 3' -65.6 NC_006146.1 + 164341 0.66 0.499264
Target:  5'- -uGUGGCCcGUugCCCCCGUUACCACg -3'
miRNA:   3'- guCGUCGGuCGcgGGGGGCGGUGGUG- -5'
28912 3' -65.6 NC_006146.1 + 138117 0.66 0.499264
Target:  5'- gAGCGucuggacgacGCUGGCGaCCCCgGCCAgCGCg -3'
miRNA:   3'- gUCGU----------CGGUCGCgGGGGgCGGUgGUG- -5'
28912 3' -65.6 NC_006146.1 + 34287 0.66 0.499264
Target:  5'- gAGCGucuggacgacGCUGGCGaCCCCgGCCAgCGCg -3'
miRNA:   3'- gUCGU----------CGGUCGCgGGGGgCGGUgGUG- -5'
28912 3' -65.6 NC_006146.1 + 55391 0.66 0.499264
Target:  5'- gGGCaccgaGGCCAGCaucacggcguaGUCgCCCGCCGCgGCc -3'
miRNA:   3'- gUCG-----UCGGUCG-----------CGGgGGGCGGUGgUG- -5'
28912 3' -65.6 NC_006146.1 + 92703 0.66 0.499264
Target:  5'- gGGCAGUgaCAGCGaCCCCUCGUgGCguCc -3'
miRNA:   3'- gUCGUCG--GUCGC-GGGGGGCGgUGguG- -5'
28912 3' -65.6 NC_006146.1 + 10753 0.66 0.499264
Target:  5'- cCAGCuggccuuaaaGGCCAGCcuGCCaaagUCCGCCGCC-Ca -3'
miRNA:   3'- -GUCG----------UCGGUCG--CGGg---GGGCGGUGGuG- -5'
28912 3' -65.6 NC_006146.1 + 54929 0.66 0.499264
Target:  5'- cCGGCAGUaGGCcucgacgucuGCCCgcggggcgaCCGCCGCCGCc -3'
miRNA:   3'- -GUCGUCGgUCG----------CGGGg--------GGCGGUGGUG- -5'
28912 3' -65.6 NC_006146.1 + 156478 0.66 0.499264
Target:  5'- aCAuCGGCCcuGUGCCCCCCGUaaaacuCUACg -3'
miRNA:   3'- -GUcGUCGGu-CGCGGGGGGCGgu----GGUG- -5'
28912 3' -65.6 NC_006146.1 + 52094 0.66 0.499264
Target:  5'- uCGGgGGCCGGCgaggccaucuGUUCCCCGUCGCUggACa -3'
miRNA:   3'- -GUCgUCGGUCG----------CGGGGGGCGGUGG--UG- -5'
28912 3' -65.6 NC_006146.1 + 15035 0.66 0.499264
Target:  5'- gGGCgccuGGCCAGgGCCCgCCggGCCugCGa -3'
miRNA:   3'- gUCG----UCGGUCgCGGGgGG--CGGugGUg -5'
28912 3' -65.6 NC_006146.1 + 117777 0.66 0.499264
Target:  5'- aGGCAaCCGucGCGCUCCCCcggGCCggGCCGCc -3'
miRNA:   3'- gUCGUcGGU--CGCGGGGGG---CGG--UGGUG- -5'
28912 3' -65.6 NC_006146.1 + 168044 0.66 0.493811
Target:  5'- cCGGUagaAGCCGGCcacaaccggcaccccGCUCCuggcgugacauuCCGCCACCGCc -3'
miRNA:   3'- -GUCG---UCGGUCG---------------CGGGG------------GGCGGUGGUG- -5'
28912 3' -65.6 NC_006146.1 + 56192 0.66 0.49019
Target:  5'- uCGGCcGCCAGgGCCCggguCUCGCggacgaGCCGCg -3'
miRNA:   3'- -GUCGuCGGUCgCGGG----GGGCGg-----UGGUG- -5'
28912 3' -65.6 NC_006146.1 + 129531 0.66 0.49019
Target:  5'- aCAGCAGagaCAGaGCCa-CgGCCACCACc -3'
miRNA:   3'- -GUCGUCg--GUCgCGGggGgCGGUGGUG- -5'
28912 3' -65.6 NC_006146.1 + 155015 0.66 0.49019
Target:  5'- uGGCucgaGGCCAGCgaGCCCUCCGgCACg-- -3'
miRNA:   3'- gUCG----UCGGUCG--CGGGGGGCgGUGgug -5'
28912 3' -65.6 NC_006146.1 + 55450 0.66 0.49019
Target:  5'- aCAGCAGUaccGUGgCCaCCCGCUcgaugGCCGCg -3'
miRNA:   3'- -GUCGUCGgu-CGCgGG-GGGCGG-----UGGUG- -5'
28912 3' -65.6 NC_006146.1 + 68969 0.66 0.49019
Target:  5'- uCAuCGGUCAcCGCCCCCgCGgCCACCGg -3'
miRNA:   3'- -GUcGUCGGUcGCGGGGG-GC-GGUGGUg -5'
28912 3' -65.6 NC_006146.1 + 133455 0.66 0.49019
Target:  5'- aGGCAGCUAGCGCaCCaCUuuucacuaggUGUCACCGg -3'
miRNA:   3'- gUCGUCGGUCGCG-GG-GG----------GCGGUGGUg -5'
28912 3' -65.6 NC_006146.1 + 136698 0.66 0.481194
Target:  5'- aAGCGGgCGGCGCgaggUCCCUGCCuggcCCAg -3'
miRNA:   3'- gUCGUCgGUCGCG----GGGGGCGGu---GGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.