miRNA display CGI


Results 1 - 20 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28912 3' -65.6 NC_006146.1 + 156478 0.66 0.499264
Target:  5'- aCAuCGGCCcuGUGCCCCCCGUaaaacuCUACg -3'
miRNA:   3'- -GUcGUCGGu-CGCGGGGGGCGgu----GGUG- -5'
28912 3' -65.6 NC_006146.1 + 62468 0.66 0.472278
Target:  5'- aCGGaCGGgCAcuGCGUCCaCCUgGCCGCCACg -3'
miRNA:   3'- -GUC-GUCgGU--CGCGGG-GGG-CGGUGGUG- -5'
28912 3' -65.6 NC_006146.1 + 105134 0.66 0.471392
Target:  5'- cUAGCAGCgAG-GCCUCCUcuaacgaGaCCGCCGCa -3'
miRNA:   3'- -GUCGUCGgUCgCGGGGGG-------C-GGUGGUG- -5'
28912 3' -65.6 NC_006146.1 + 137489 0.66 0.471392
Target:  5'- gCGGCGGCgCAGCggugcccaggcggGCCaCCCC-CCACC-Cg -3'
miRNA:   3'- -GUCGUCG-GUCG-------------CGG-GGGGcGGUGGuG- -5'
28912 3' -65.6 NC_006146.1 + 46760 0.66 0.463447
Target:  5'- -uGgGGCCAuGCuGCCaaaCgCGCCACCGCa -3'
miRNA:   3'- guCgUCGGU-CG-CGGg--GgGCGGUGGUG- -5'
28912 3' -65.6 NC_006146.1 + 113518 0.66 0.463447
Target:  5'- aCGGUcgcggGGCCAGC-CCaCCggCGCCACCGCc -3'
miRNA:   3'- -GUCG-----UCGGUCGcGG-GGg-GCGGUGGUG- -5'
28912 3' -65.6 NC_006146.1 + 160167 0.66 0.463447
Target:  5'- cCAGCuGGCguGUGCCCUCC-CCACUu- -3'
miRNA:   3'- -GUCG-UCGguCGCGGGGGGcGGUGGug -5'
28912 3' -65.6 NC_006146.1 + 18649 0.66 0.463447
Target:  5'- aGGCAGCCAGggauCGCaugCCCgGCCuuCGCa -3'
miRNA:   3'- gUCGUCGGUC----GCGg--GGGgCGGugGUG- -5'
28912 3' -65.6 NC_006146.1 + 40364 0.66 0.454704
Target:  5'- gCGGCGGagaAG-GCCCCCUGgUCGCCGCc -3'
miRNA:   3'- -GUCGUCgg-UCgCGGGGGGC-GGUGGUG- -5'
28912 3' -65.6 NC_006146.1 + 111180 0.66 0.472278
Target:  5'- aGGCgAGagauGCGCCCCCCGaCCAgauUCACa -3'
miRNA:   3'- gUCG-UCggu-CGCGGGGGGC-GGU---GGUG- -5'
28912 3' -65.6 NC_006146.1 + 127393 0.66 0.472278
Target:  5'- gAGguGUCuuGGgGCUgggCCCCGCCGCCGg -3'
miRNA:   3'- gUCguCGG--UCgCGG---GGGGCGGUGGUg -5'
28912 3' -65.6 NC_006146.1 + 117729 0.66 0.472278
Target:  5'- gGGCcgaGGCCgAGC-CUUCCgGCCACCGCc -3'
miRNA:   3'- gUCG---UCGG-UCGcGGGGGgCGGUGGUG- -5'
28912 3' -65.6 NC_006146.1 + 117129 0.66 0.499264
Target:  5'- aGGCccucGuCCGGCGagaCCUCCGCCcGCCGCc -3'
miRNA:   3'- gUCGu---C-GGUCGCg--GGGGGCGG-UGGUG- -5'
28912 3' -65.6 NC_006146.1 + 15035 0.66 0.499264
Target:  5'- gGGCgccuGGCCAGgGCCCgCCggGCCugCGa -3'
miRNA:   3'- gUCG----UCGGUCgCGGGgGG--CGGugGUg -5'
28912 3' -65.6 NC_006146.1 + 168044 0.66 0.493811
Target:  5'- cCGGUagaAGCCGGCcacaaccggcaccccGCUCCuggcgugacauuCCGCCACCGCc -3'
miRNA:   3'- -GUCG---UCGGUCG---------------CGGGG------------GGCGGUGGUG- -5'
28912 3' -65.6 NC_006146.1 + 129531 0.66 0.49019
Target:  5'- aCAGCAGagaCAGaGCCa-CgGCCACCACc -3'
miRNA:   3'- -GUCGUCg--GUCgCGGggGgCGGUGGUG- -5'
28912 3' -65.6 NC_006146.1 + 136698 0.66 0.481194
Target:  5'- aAGCGGgCGGCGCgaggUCCCUGCCuggcCCAg -3'
miRNA:   3'- gUCGUCgGUCGCG----GGGGGCGGu---GGUg -5'
28912 3' -65.6 NC_006146.1 + 69269 0.66 0.481194
Target:  5'- aGGUGGacgaaCGGCGgCCgUUGCCACCGCg -3'
miRNA:   3'- gUCGUCg----GUCGCgGGgGGCGGUGGUG- -5'
28912 3' -65.6 NC_006146.1 + 15318 0.66 0.481194
Target:  5'- aGGcCAGCCccgguGUGCCCCUggcgggCGCC-CCGCg -3'
miRNA:   3'- gUC-GUCGGu----CGCGGGGG------GCGGuGGUG- -5'
28912 3' -65.6 NC_006146.1 + 100960 0.66 0.481194
Target:  5'- cCAGCAgGCCAGCGCggggcggcucaCCCUGgucaacaaaaCCACCAUc -3'
miRNA:   3'- -GUCGU-CGGUCGCGg----------GGGGC----------GGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.