miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28912 5' -52.9 NC_006146.1 + 166019 0.65 0.981204
Target:  5'- aGGCGGCGCagGCCGAgauucuuuccuguuAAcggcgagauGGCCAgcGCUUCa -3'
miRNA:   3'- gCCGUCGCG--CGGUU--------------UU---------CUGGU--UGAAG- -5'
28912 5' -52.9 NC_006146.1 + 143558 0.66 0.980339
Target:  5'- cCGGCcuuGcCGCGCCAcccgcuguuuuugGAGGGCCAGuugaagcaggcauguCUUCa -3'
miRNA:   3'- -GCCGu--C-GCGCGGU-------------UUUCUGGUU---------------GAAG- -5'
28912 5' -52.9 NC_006146.1 + 157845 0.66 0.979671
Target:  5'- gGGCGGC-CGCCuuGGGGCCcggagUCu -3'
miRNA:   3'- gCCGUCGcGCGGuuUUCUGGuuga-AG- -5'
28912 5' -52.9 NC_006146.1 + 56490 0.66 0.979671
Target:  5'- gCGGCaucAGCGCGCgCAGucGGGCC-GCggggUCg -3'
miRNA:   3'- -GCCG---UCGCGCG-GUUu-UCUGGuUGa---AG- -5'
28912 5' -52.9 NC_006146.1 + 167914 0.66 0.979671
Target:  5'- gGGCaccGGCGCGUgGAGaAGACC--CUUCu -3'
miRNA:   3'- gCCG---UCGCGCGgUUU-UCUGGuuGAAG- -5'
28912 5' -52.9 NC_006146.1 + 65068 0.66 0.979671
Target:  5'- uGGCAGCGCcuccggaugucgGCC-GGGGACCccuggGugUUCu -3'
miRNA:   3'- gCCGUCGCG------------CGGuUUUCUGG-----UugAAG- -5'
28912 5' -52.9 NC_006146.1 + 168846 0.66 0.979671
Target:  5'- gGGCaccGGCGCGUgGAGaAGACC--CUUCu -3'
miRNA:   3'- gCCG---UCGCGCGgUUU-UCUGGuuGAAG- -5'
28912 5' -52.9 NC_006146.1 + 169778 0.66 0.979671
Target:  5'- gGGCaccGGCGCGUgGAGaAGACC--CUUCu -3'
miRNA:   3'- gCCG---UCGCGCGgUUU-UCUGGuuGAAG- -5'
28912 5' -52.9 NC_006146.1 + 58209 0.66 0.979671
Target:  5'- -uGCuGCGgGCCAGacccgagaucGAGACCGACa-- -3'
miRNA:   3'- gcCGuCGCgCGGUU----------UUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 167012 0.66 0.979671
Target:  5'- gGGCcucgucGGUGgGCCucgccGAGACCAgcaGCUUCu -3'
miRNA:   3'- gCCG------UCGCgCGGuu---UUCUGGU---UGAAG- -5'
28912 5' -52.9 NC_006146.1 + 142456 0.66 0.979671
Target:  5'- gGGCGGC-CGCCuuGGGGCCcggagUCu -3'
miRNA:   3'- gCCGUCGcGCGGuuUUCUGGuuga-AG- -5'
28912 5' -52.9 NC_006146.1 + 145534 0.66 0.979671
Target:  5'- gGGCGGC-CGCCuuGGGGCCcggagUCu -3'
miRNA:   3'- gCCGUCGcGCGGuuUUCUGGuuga-AG- -5'
28912 5' -52.9 NC_006146.1 + 148612 0.66 0.979671
Target:  5'- gGGCGGC-CGCCuuGGGGCCcggagUCu -3'
miRNA:   3'- gCCGUCGcGCGGuuUUCUGGuuga-AG- -5'
28912 5' -52.9 NC_006146.1 + 154767 0.66 0.979671
Target:  5'- gGGCGGC-CGCCuuGGGGCCcggagUCu -3'
miRNA:   3'- gCCGUCGcGCGGuuUUCUGGuuga-AG- -5'
28912 5' -52.9 NC_006146.1 + 15147 0.66 0.979444
Target:  5'- gGGUcuacagcuccucgGGCGaCGCCGuggaagcgcuGAAGGCCGACUg- -3'
miRNA:   3'- gCCG-------------UCGC-GCGGU----------UUUCUGGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 19137 0.66 0.977323
Target:  5'- gGGCAgGCGCaagGCUGAcGGGGCCAGCg-- -3'
miRNA:   3'- gCCGU-CGCG---CGGUU-UUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 57299 0.66 0.977323
Target:  5'- gGGCAG-GCGaCgGAGAGACUGGCg-- -3'
miRNA:   3'- gCCGUCgCGC-GgUUUUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 52023 0.66 0.977077
Target:  5'- aGGCAGUccGCgGCgGAGGGGCUguuucauAGCUUCg -3'
miRNA:   3'- gCCGUCG--CG-CGgUUUUCUGG-------UUGAAG- -5'
28912 5' -52.9 NC_006146.1 + 161754 0.66 0.976581
Target:  5'- uGGCGGCugagguccgaggggGCGCCugggcGGGGGCCugaauCUUCg -3'
miRNA:   3'- gCCGUCG--------------CGCGGu----UUUCUGGuu---GAAG- -5'
28912 5' -52.9 NC_006146.1 + 58121 0.66 0.975044
Target:  5'- aGGCaggagAGCGUGCCucAuuuuuacaugcgccuGGCCGGCUUCu -3'
miRNA:   3'- gCCG-----UCGCGCGGuuUu--------------CUGGUUGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.