Results 41 - 60 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28912 | 5' | -52.9 | NC_006146.1 | + | 167012 | 0.66 | 0.979671 |
Target: 5'- gGGCcucgucGGUGgGCCucgccGAGACCAgcaGCUUCu -3' miRNA: 3'- gCCG------UCGCgCGGuu---UUCUGGU---UGAAG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 142456 | 0.66 | 0.979671 |
Target: 5'- gGGCGGC-CGCCuuGGGGCCcggagUCu -3' miRNA: 3'- gCCGUCGcGCGGuuUUCUGGuuga-AG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 145534 | 0.66 | 0.979671 |
Target: 5'- gGGCGGC-CGCCuuGGGGCCcggagUCu -3' miRNA: 3'- gCCGUCGcGCGGuuUUCUGGuuga-AG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 148612 | 0.66 | 0.979671 |
Target: 5'- gGGCGGC-CGCCuuGGGGCCcggagUCu -3' miRNA: 3'- gCCGUCGcGCGGuuUUCUGGuuga-AG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 154767 | 0.66 | 0.979671 |
Target: 5'- gGGCGGC-CGCCuuGGGGCCcggagUCu -3' miRNA: 3'- gCCGUCGcGCGGuuUUCUGGuuga-AG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 28247 | 0.66 | 0.97478 |
Target: 5'- uGGCuGCGauaGCCGAGcacGCCAuggGCUUCg -3' miRNA: 3'- gCCGuCGCg--CGGUUUuc-UGGU---UGAAG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 13057 | 0.66 | 0.97478 |
Target: 5'- aGGCGGCGCucgguGCCcGuccccuccGGGGCCAGCg-- -3' miRNA: 3'- gCCGUCGCG-----CGGuU--------UUCUGGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 35675 | 0.66 | 0.971174 |
Target: 5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3' miRNA: 3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 42668 | 0.66 | 0.971751 |
Target: 5'- aGGUAGCggaagagcuccccGCGCCGAAAGAgcgucuggcCCGGCg-- -3' miRNA: 3'- gCCGUCG-------------CGCGGUUUUCU---------GGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 40285 | 0.66 | 0.972037 |
Target: 5'- gGGCggaGGCGgGCCAaAGAGGCCGGg--- -3' miRNA: 3'- gCCG---UCGCgCGGU-UUUCUGGUUgaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 86545 | 0.66 | 0.972037 |
Target: 5'- gGGCAGCuGgGCUuGAGGGgCAGCUg- -3' miRNA: 3'- gCCGUCG-CgCGGuUUUCUgGUUGAag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 86579 | 0.66 | 0.972037 |
Target: 5'- gGGCAGCuGgGCUuGAGGGgCAGCUg- -3' miRNA: 3'- gCCGUCG-CgCGGuUUUCUgGUUGAag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 86613 | 0.66 | 0.972037 |
Target: 5'- gGGCAGCuGgGCUuGAGGGgCAGCUg- -3' miRNA: 3'- gCCGUCG-CgCGGuUUUCUgGUUGAag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 90055 | 0.66 | 0.972037 |
Target: 5'- gGGguGCGUuaugcacguggGCCAu--GGCCGugUUCu -3' miRNA: 3'- gCCguCGCG-----------CGGUuuuCUGGUugAAG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 117035 | 0.66 | 0.972037 |
Target: 5'- aCGGgGGCGCu---GAGGGCCAGCgUCg -3' miRNA: 3'- -GCCgUCGCGcgguUUUCUGGUUGaAG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 931 | 0.66 | 0.972037 |
Target: 5'- gGGC-GCGCGCCGgccucccgucccGAAGGCCcuGGCa-- -3' miRNA: 3'- gCCGuCGCGCGGU------------UUUCUGG--UUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 1863 | 0.66 | 0.972037 |
Target: 5'- gGGC-GCGCGCCGgccucccgucccGAAGGCCcuGGCa-- -3' miRNA: 3'- gCCGuCGCGCGGU------------UUUCUGG--UUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 2795 | 0.66 | 0.972037 |
Target: 5'- gGGC-GCGCGCCGgccucccgucccGAAGGCCcuGGCa-- -3' miRNA: 3'- gCCGuCGCGCGGU------------UUUCUGG--UUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 3727 | 0.66 | 0.972037 |
Target: 5'- gGGC-GCGCGCCGgccucccgucccGAAGGCCcuGGCa-- -3' miRNA: 3'- gCCGuCGCGCGGU------------UUUCUGG--UUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 112004 | 0.66 | 0.972037 |
Target: 5'- -uGCAGguCGCGCCAAAagugggcguugcAGGCCucCUUCa -3' miRNA: 3'- gcCGUC--GCGCGGUUU------------UCUGGuuGAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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