miRNA display CGI


Results 61 - 80 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28912 5' -52.9 NC_006146.1 + 35489 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 35396 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 35303 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 35210 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 35117 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 35024 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 34931 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 34839 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 35675 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 42668 0.66 0.971751
Target:  5'- aGGUAGCggaagagcuccccGCGCCGAAAGAgcgucuggcCCGGCg-- -3'
miRNA:   3'- gCCGUCG-------------CGCGGUUUUCU---------GGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 40285 0.66 0.972037
Target:  5'- gGGCggaGGCGgGCCAaAGAGGCCGGg--- -3'
miRNA:   3'- gCCG---UCGCgCGGU-UUUCUGGUUgaag -5'
28912 5' -52.9 NC_006146.1 + 931 0.66 0.972037
Target:  5'- gGGC-GCGCGCCGgccucccgucccGAAGGCCcuGGCa-- -3'
miRNA:   3'- gCCGuCGCGCGGU------------UUUCUGG--UUGaag -5'
28912 5' -52.9 NC_006146.1 + 117035 0.66 0.972037
Target:  5'- aCGGgGGCGCu---GAGGGCCAGCgUCg -3'
miRNA:   3'- -GCCgUCGCGcgguUUUCUGGUUGaAG- -5'
28912 5' -52.9 NC_006146.1 + 90055 0.66 0.972037
Target:  5'- gGGguGCGUuaugcacguggGCCAu--GGCCGugUUCu -3'
miRNA:   3'- gCCguCGCG-----------CGGUuuuCUGGUugAAG- -5'
28912 5' -52.9 NC_006146.1 + 86613 0.66 0.972037
Target:  5'- gGGCAGCuGgGCUuGAGGGgCAGCUg- -3'
miRNA:   3'- gCCGUCG-CgCGGuUUUCUgGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 86579 0.66 0.972037
Target:  5'- gGGCAGCuGgGCUuGAGGGgCAGCUg- -3'
miRNA:   3'- gCCGUCG-CgCGGuUUUCUgGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 86545 0.66 0.972037
Target:  5'- gGGCAGCuGgGCUuGAGGGgCAGCUg- -3'
miRNA:   3'- gCCGUCG-CgCGGuUUUCUgGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 136702 0.67 0.95778
Target:  5'- gGGCGGCGCgaggucccugccugGCCcAGGGuCCGGCUg- -3'
miRNA:   3'- gCCGUCGCG--------------CGGuUUUCuGGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 111899 0.67 0.962527
Target:  5'- aGGCAGCGCGggaggCAGAuguuGGCCAGgUUg -3'
miRNA:   3'- gCCGUCGCGCg----GUUUu---CUGGUUgAAg -5'
28912 5' -52.9 NC_006146.1 + 123148 0.67 0.962527
Target:  5'- aGGCcguacucgccagGGCGCGCgAGGAGGCCccgGACg-- -3'
miRNA:   3'- gCCG------------UCGCGCGgUUUUCUGG---UUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.