miRNA display CGI


Results 81 - 100 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28912 5' -52.9 NC_006146.1 + 49746 0.67 0.950972
Target:  5'- gGGCGGUGC-CCAGGuAGAgCAGCUc- -3'
miRNA:   3'- gCCGUCGCGcGGUUU-UCUgGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 79795 0.67 0.965917
Target:  5'- aGGCGGagcggGCGUCGAGuuGCCAugGCUUCc -3'
miRNA:   3'- gCCGUCg----CGCGGUUUucUGGU--UGAAG- -5'
28912 5' -52.9 NC_006146.1 + 161771 0.67 0.95506
Target:  5'- aGGCAaCGCcCCGugGGAGACCGGCUcCa -3'
miRNA:   3'- gCCGUcGCGcGGU--UUUCUGGUUGAaG- -5'
28912 5' -52.9 NC_006146.1 + 151465 0.67 0.950972
Target:  5'- -aGCGGCGCGCCGc--GuCCAcguugGCUUCg -3'
miRNA:   3'- gcCGUCGCGCGGUuuuCuGGU-----UGAAG- -5'
28912 5' -52.9 NC_006146.1 + 98446 0.67 0.965917
Target:  5'- cCGGUuucGGCGcCGCCcGGGGGCCAGucUCu -3'
miRNA:   3'- -GCCG---UCGC-GCGGuUUUCUGGUUgaAG- -5'
28912 5' -52.9 NC_006146.1 + 127827 0.67 0.95506
Target:  5'- aGGgAGCGCGCCAGucG-CUGGCa-- -3'
miRNA:   3'- gCCgUCGCGCGGUUuuCuGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 45589 0.67 0.95891
Target:  5'- aGGCGGCcUGCCucgcGAAGACgGACaUCu -3'
miRNA:   3'- gCCGUCGcGCGGu---UUUCUGgUUGaAG- -5'
28912 5' -52.9 NC_006146.1 + 111899 0.67 0.962527
Target:  5'- aGGCAGCGCGggaggCAGAuguuGGCCAGgUUg -3'
miRNA:   3'- gCCGUCGCGCg----GUUUu---CUGGUUgAAg -5'
28912 5' -52.9 NC_006146.1 + 136702 0.67 0.95778
Target:  5'- gGGCGGCGCgaggucccugccugGCCcAGGGuCCGGCUg- -3'
miRNA:   3'- gCCGUCGCG--------------CGGuUUUCuGGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 72196 0.67 0.962527
Target:  5'- -cGCGGCG-GCCGgaugggcgGGAGACCAGCg-- -3'
miRNA:   3'- gcCGUCGCgCGGU--------UUUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 19190 0.67 0.965588
Target:  5'- aGGCcuacuucuacgcaGGCGCGCCucAGGGCCugGACg-- -3'
miRNA:   3'- gCCG-------------UCGCGCGGuuUUCUGG--UUGaag -5'
28912 5' -52.9 NC_006146.1 + 128472 0.67 0.95891
Target:  5'- uGGCGGCGCGCac-----CCAGCUg- -3'
miRNA:   3'- gCCGUCGCGCGguuuucuGGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 123148 0.67 0.962527
Target:  5'- aGGCcguacucgccagGGCGCGCgAGGAGGCCccgGACg-- -3'
miRNA:   3'- gCCG------------UCGCGCGgUUUUCUGG---UUGaag -5'
28912 5' -52.9 NC_006146.1 + 161972 0.67 0.962527
Target:  5'- gGGCAaCGCcCCGugGGAGACCGGCUcCa -3'
miRNA:   3'- gCCGUcGCGcGGU--UUUCUGGUUGAaG- -5'
28912 5' -52.9 NC_006146.1 + 170604 0.67 0.95891
Target:  5'- uGGCgAGCGCGCC---GGGCCcGCc-- -3'
miRNA:   3'- gCCG-UCGCGCGGuuuUCUGGuUGaag -5'
28912 5' -52.9 NC_006146.1 + 54790 0.67 0.962527
Target:  5'- aGGgAGCGCGCCuu--GGgCAGCUc- -3'
miRNA:   3'- gCCgUCGCGCGGuuuuCUgGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 115364 0.67 0.962527
Target:  5'- aGGCAGCGCGUCcccucgGGGAGuUgGACUUUu -3'
miRNA:   3'- gCCGUCGCGCGG------UUUUCuGgUUGAAG- -5'
28912 5' -52.9 NC_006146.1 + 66576 0.67 0.950972
Target:  5'- aGGCGGCGCaggcagGCCGuGAGACCcAUa-- -3'
miRNA:   3'- gCCGUCGCG------CGGUuUUCUGGuUGaag -5'
28912 5' -52.9 NC_006146.1 + 155720 0.67 0.965917
Target:  5'- aGGCGGC-CGCgCAGucGGCCuucagcGCUUCc -3'
miRNA:   3'- gCCGUCGcGCG-GUUuuCUGGu-----UGAAG- -5'
28912 5' -52.9 NC_006146.1 + 43320 0.67 0.962527
Target:  5'- cCGGcCGGCGCgGCCucggccgcccAGGGCCAGCa-- -3'
miRNA:   3'- -GCC-GUCGCG-CGGuu--------UUCUGGUUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.