miRNA display CGI


Results 21 - 40 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28912 5' -52.9 NC_006146.1 + 108881 0.72 0.781935
Target:  5'- gCGGCAGaggccgaGCGCCGc--GGCCAGCgagUCa -3'
miRNA:   3'- -GCCGUCg------CGCGGUuuuCUGGUUGa--AG- -5'
28912 5' -52.9 NC_006146.1 + 64429 0.72 0.752989
Target:  5'- aCGGCGGCGUacgcuGCCAGGAGACagaggGGCUg- -3'
miRNA:   3'- -GCCGUCGCG-----CGGUUUUCUGg----UUGAag -5'
28912 5' -52.9 NC_006146.1 + 8527 0.72 0.791315
Target:  5'- gGGCgcgGGCGCGCCAAGGGGCUc----- -3'
miRNA:   3'- gCCG---UCGCGCGGUUUUCUGGuugaag -5'
28912 5' -52.9 NC_006146.1 + 99222 0.72 0.800545
Target:  5'- gCGGCcucGGCGCGCCc---GACCAccgucucggGCUUCu -3'
miRNA:   3'- -GCCG---UCGCGCGGuuuuCUGGU---------UGAAG- -5'
28912 5' -52.9 NC_006146.1 + 108364 0.71 0.835782
Target:  5'- aGGgAGUGCugGCCAGGAGACCGAg--- -3'
miRNA:   3'- gCCgUCGCG--CGGUUUUCUGGUUgaag -5'
28912 5' -52.9 NC_006146.1 + 60462 0.71 0.82203
Target:  5'- gCGGCAGgcCGCggggagcggugagagGCCGGGGGGCCAGCUc- -3'
miRNA:   3'- -GCCGUC--GCG---------------CGGUUUUCUGGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 129336 0.71 0.835782
Target:  5'- uCGcGCAGCGCGCgGAgcGGCCGG-UUCu -3'
miRNA:   3'- -GC-CGUCGCGCGgUUuuCUGGUUgAAG- -5'
28912 5' -52.9 NC_006146.1 + 21948 0.71 0.809616
Target:  5'- aGGCc-CGCGCCAuuGGGGCCAGCa-- -3'
miRNA:   3'- gCCGucGCGCGGUu-UUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 101475 0.71 0.827243
Target:  5'- gGGuCAGCGUcaGCCu---GACCAACUUUg -3'
miRNA:   3'- gCC-GUCGCG--CGGuuuuCUGGUUGAAG- -5'
28912 5' -52.9 NC_006146.1 + 126321 0.71 0.827243
Target:  5'- aGGCAGCG-GCCcGGGGGCCAGg--- -3'
miRNA:   3'- gCCGUCGCgCGGuUUUCUGGUUgaag -5'
28912 5' -52.9 NC_006146.1 + 127069 0.71 0.844127
Target:  5'- uGGCGGCGCgggaaGCCGAAAgGGCCAggGCg-- -3'
miRNA:   3'- gCCGUCGCG-----CGGUUUU-CUGGU--UGaag -5'
28912 5' -52.9 NC_006146.1 + 147367 0.71 0.827243
Target:  5'- uCGGCGGC-CGCCAGAcacgGGAgucCCGAgUUCa -3'
miRNA:   3'- -GCCGUCGcGCGGUUU----UCU---GGUUgAAG- -5'
28912 5' -52.9 NC_006146.1 + 57092 0.7 0.860206
Target:  5'- aCGaGCGGCGCGUCcu--GGCCAGCg-- -3'
miRNA:   3'- -GC-CGUCGCGCGGuuuuCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 15879 0.7 0.860206
Target:  5'- --aCAGCGUGCCGGAGGGCUcGCUg- -3'
miRNA:   3'- gccGUCGCGCGGUUUUCUGGuUGAag -5'
28912 5' -52.9 NC_006146.1 + 128282 0.7 0.860206
Target:  5'- aCGGCGGCG-GCCGAGcc-CCAgGCUUCg -3'
miRNA:   3'- -GCCGUCGCgCGGUUUucuGGU-UGAAG- -5'
28912 5' -52.9 NC_006146.1 + 57374 0.7 0.852271
Target:  5'- gCGGCGGUgGCGCCGGuGGGCUGGCc-- -3'
miRNA:   3'- -GCCGUCG-CGCGGUUuUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 17891 0.7 0.875423
Target:  5'- uGGCAGCaucagaGCGCCAGAAGcCCAc---- -3'
miRNA:   3'- gCCGUCG------CGCGGUUUUCuGGUugaag -5'
28912 5' -52.9 NC_006146.1 + 20968 0.7 0.875423
Target:  5'- uGGCAGCaucagaGCGCCAGAAGcCCAc---- -3'
miRNA:   3'- gCCGUCG------CGCGGUUUUCuGGUugaag -5'
28912 5' -52.9 NC_006146.1 + 117874 0.7 0.882693
Target:  5'- uCGGCGGCG-GCCGc--GGCCAGCcgCg -3'
miRNA:   3'- -GCCGUCGCgCGGUuuuCUGGUUGaaG- -5'
28912 5' -52.9 NC_006146.1 + 14813 0.7 0.875423
Target:  5'- uGGCAGCaucagaGCGCCAGAAGcCCAc---- -3'
miRNA:   3'- gCCGUCG------CGCGGUUUUCuGGUugaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.