Results 61 - 80 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28912 | 5' | -52.9 | NC_006146.1 | + | 71684 | 0.68 | 0.932181 |
Target: 5'- uGGUcgGGCGCGCCG--AGGCCGcgGCcUCc -3' miRNA: 3'- gCCG--UCGCGCGGUuuUCUGGU--UGaAG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 42440 | 0.68 | 0.932181 |
Target: 5'- uGGguGCGCGCC-----GCCAGCa-- -3' miRNA: 3'- gCCguCGCGCGGuuuucUGGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 39699 | 0.68 | 0.926862 |
Target: 5'- -uGCAGCGCcgcuCCGGAGGcagaggccugcACCAGCUUCu -3' miRNA: 3'- gcCGUCGCGc---GGUUUUC-----------UGGUUGAAG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 123936 | 0.68 | 0.926862 |
Target: 5'- uGGCGGCG-GCC---GGGCCGGCg-- -3' miRNA: 3'- gCCGUCGCgCGGuuuUCUGGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 77315 | 0.68 | 0.92355 |
Target: 5'- cCGGCGGguCGCGCaugcccaGGcugauggugaaggacGAGGCCGGCUUCg -3' miRNA: 3'- -GCCGUC--GCGCGg------UU---------------UUCUGGUUGAAG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 22004 | 0.68 | 0.946644 |
Target: 5'- cCGGCGG-GCGCCAccAGGucCCAACa-- -3' miRNA: 3'- -GCCGUCgCGCGGUuuUCU--GGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 105610 | 0.68 | 0.946644 |
Target: 5'- aGGCAGCGCaGCCAGGuccaCAGCcgCa -3' miRNA: 3'- gCCGUCGCG-CGGUUUucugGUUGaaG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 159923 | 0.68 | 0.946644 |
Target: 5'- cCGGCAGCGcCGCCugcuuuAGGugCA-CUg- -3' miRNA: 3'- -GCCGUCGC-GCGGuu----UUCugGUuGAag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 10989 | 0.68 | 0.946644 |
Target: 5'- aGGCGGCGCuGCCGGu-GACgGggguCUUCu -3' miRNA: 3'- gCCGUCGCG-CGGUUuuCUGgUu---GAAG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 51947 | 0.68 | 0.926862 |
Target: 5'- gCGGUcuGCGCGCCAAcuGGcGCCGACg-- -3' miRNA: 3'- -GCCGu-CGCGCGGUUu-UC-UGGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 52987 | 0.68 | 0.93725 |
Target: 5'- gGGCGG-GCGUCucGAGGCCccuCUUCu -3' miRNA: 3'- gCCGUCgCGCGGuuUUCUGGuu-GAAG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 47608 | 0.68 | 0.946644 |
Target: 5'- uCGGCGGC-CGCCAGggaucgccgauAGGGCCAcgaGCcgUCu -3' miRNA: 3'- -GCCGUCGcGCGGUU-----------UUCUGGU---UGa-AG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 12770 | 0.68 | 0.946644 |
Target: 5'- cCGGCGG-GCGCCAccAGGucCCAACa-- -3' miRNA: 3'- -GCCGUCgCGCGGUuuUCU--GGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 15849 | 0.68 | 0.946644 |
Target: 5'- cCGGCGG-GCGCCAccAGGucCCAACa-- -3' miRNA: 3'- -GCCGUCgCGCGGUuuUCU--GGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 18927 | 0.68 | 0.946644 |
Target: 5'- cCGGCGG-GCGCCAccAGGucCCAACa-- -3' miRNA: 3'- -GCCGUCgCGCGGUuuUCU--GGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 25082 | 0.68 | 0.946644 |
Target: 5'- cCGGCGG-GCGCCAccAGGucCCAACa-- -3' miRNA: 3'- -GCCGUCgCGCGGUuuUCU--GGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 122328 | 0.68 | 0.93725 |
Target: 5'- uGGCucuUGUGCCAGGGGGCCGAgcUCa -3' miRNA: 3'- gCCGuc-GCGCGGUUUUCUGGUUgaAG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 147311 | 0.68 | 0.94207 |
Target: 5'- uGGgAGCGUGCaccuGGAAGACgCAGCUg- -3' miRNA: 3'- gCCgUCGCGCGg---UUUUCUG-GUUGAag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 155154 | 0.68 | 0.946644 |
Target: 5'- -aGCAGCGgGCCA--GGGCCAcguuGCUg- -3' miRNA: 3'- gcCGUCGCgCGGUuuUCUGGU----UGAag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 43278 | 0.68 | 0.921292 |
Target: 5'- aGGCAGCGgGCCGGcGGugCcGCc-- -3' miRNA: 3'- gCCGUCGCgCGGUUuUCugGuUGaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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