miRNA display CGI


Results 41 - 60 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28912 5' -52.9 NC_006146.1 + 27124 0.7 0.875423
Target:  5'- uGGCAGCaucagaGCGCCAGAAGcCCAc---- -3'
miRNA:   3'- gCCGUCG------CGCGGUUUUCuGGUugaag -5'
28912 5' -52.9 NC_006146.1 + 92449 0.7 0.882693
Target:  5'- -uGUAGCgGCGCCGGGAuGGCCAugUUUc -3'
miRNA:   3'- gcCGUCG-CGCGGUUUU-CUGGUugAAG- -5'
28912 5' -52.9 NC_006146.1 + 117874 0.7 0.882693
Target:  5'- uCGGCGGCG-GCCGc--GGCCAGCcgCg -3'
miRNA:   3'- -GCCGUCGCgCGGUuuuCUGGUUGaaG- -5'
28912 5' -52.9 NC_006146.1 + 49501 0.69 0.889731
Target:  5'- gGGCGGCGUGgCAucuGGAUCGGCg-- -3'
miRNA:   3'- gCCGUCGCGCgGUuu-UCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 146752 0.69 0.896531
Target:  5'- aGGCGGaCGaCGCC-AGAGGCCGAg-UCa -3'
miRNA:   3'- gCCGUC-GC-GCGGuUUUCUGGUUgaAG- -5'
28912 5' -52.9 NC_006146.1 + 125732 0.69 0.896531
Target:  5'- aGGcCAG-GUGCuCAAAGGACCAGCg-- -3'
miRNA:   3'- gCC-GUCgCGCG-GUUUUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 89425 0.69 0.896531
Target:  5'- aGGCcuGGUuggagGC-CCAAGAGGCUAACUUCg -3'
miRNA:   3'- gCCG--UCG-----CGcGGUUUUCUGGUUGAAG- -5'
28912 5' -52.9 NC_006146.1 + 71015 0.69 0.90309
Target:  5'- gGGCAGagGCGCC---GGAUCAGCUg- -3'
miRNA:   3'- gCCGUCg-CGCGGuuuUCUGGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 147169 0.69 0.90309
Target:  5'- cCGGCGGCgGCGC----AGACCGGCg-- -3'
miRNA:   3'- -GCCGUCG-CGCGguuuUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 10734 0.69 0.908785
Target:  5'- gGGCAGCcagaGCCAGccGGGGCCAugcggcuacaucuACUUCu -3'
miRNA:   3'- gCCGUCGcg--CGGUU--UUCUGGU-------------UGAAG- -5'
28912 5' -52.9 NC_006146.1 + 131689 0.69 0.909405
Target:  5'- aGGguGuCGCGuCCA--AGGCCGACUa- -3'
miRNA:   3'- gCCguC-GCGC-GGUuuUCUGGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 169140 0.69 0.915473
Target:  5'- gGGCcGCGCGUgGGGAuGGCCGGCg-- -3'
miRNA:   3'- gCCGuCGCGCGgUUUU-CUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 170072 0.69 0.915473
Target:  5'- gGGCcGCGCGUgGGGAuGGCCGGCg-- -3'
miRNA:   3'- gCCGuCGCGCGgUUUU-CUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 130534 0.69 0.915473
Target:  5'- gGGCGGCGa-CCAGGGGGCCuuCUcCg -3'
miRNA:   3'- gCCGUCGCgcGGUUUUCUGGuuGAaG- -5'
28912 5' -52.9 NC_006146.1 + 160147 0.69 0.915473
Target:  5'- uGGCAG-GCugGCCuuuAAGGCCAGCUg- -3'
miRNA:   3'- gCCGUCgCG--CGGuu-UUCUGGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 168208 0.69 0.915473
Target:  5'- gGGCcGCGCGUgGGGAuGGCCGGCg-- -3'
miRNA:   3'- gCCGuCGCGCGgUUUU-CUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 167276 0.69 0.915473
Target:  5'- gGGCcGCGCGUgGGGAuGGCCGGCg-- -3'
miRNA:   3'- gCCGuCGCGCGgUUUU-CUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 43278 0.68 0.921292
Target:  5'- aGGCAGCGgGCCGGcGGugCcGCc-- -3'
miRNA:   3'- gCCGUCGCgCGGUUuUCugGuUGaag -5'
28912 5' -52.9 NC_006146.1 + 77315 0.68 0.92355
Target:  5'- cCGGCGGguCGCGCaugcccaGGcugauggugaaggacGAGGCCGGCUUCg -3'
miRNA:   3'- -GCCGUC--GCGCGg------UU---------------UUCUGGUUGAAG- -5'
28912 5' -52.9 NC_006146.1 + 39699 0.68 0.926862
Target:  5'- -uGCAGCGCcgcuCCGGAGGcagaggccugcACCAGCUUCu -3'
miRNA:   3'- gcCGUCGCGc---GGUUUUC-----------UGGUUGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.