miRNA display CGI


Results 61 - 80 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28912 5' -52.9 NC_006146.1 + 123936 0.68 0.926862
Target:  5'- uGGCGGCG-GCC---GGGCCGGCg-- -3'
miRNA:   3'- gCCGUCGCgCGGuuuUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 51947 0.68 0.926862
Target:  5'- gCGGUcuGCGCGCCAAcuGGcGCCGACg-- -3'
miRNA:   3'- -GCCGu-CGCGCGGUUu-UC-UGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 42440 0.68 0.932181
Target:  5'- uGGguGCGCGCC-----GCCAGCa-- -3'
miRNA:   3'- gCCguCGCGCGGuuuucUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 71684 0.68 0.932181
Target:  5'- uGGUcgGGCGCGCCG--AGGCCGcgGCcUCc -3'
miRNA:   3'- gCCG--UCGCGCGGUuuUCUGGU--UGaAG- -5'
28912 5' -52.9 NC_006146.1 + 52987 0.68 0.93725
Target:  5'- gGGCGG-GCGUCucGAGGCCccuCUUCu -3'
miRNA:   3'- gCCGUCgCGCGGuuUUCUGGuu-GAAG- -5'
28912 5' -52.9 NC_006146.1 + 122328 0.68 0.93725
Target:  5'- uGGCucuUGUGCCAGGGGGCCGAgcUCa -3'
miRNA:   3'- gCCGuc-GCGCGGUUUUCUGGUUgaAG- -5'
28912 5' -52.9 NC_006146.1 + 86493 0.68 0.93725
Target:  5'- gGGCAGCuGgGCCuuGAGGGgCAGCUg- -3'
miRNA:   3'- gCCGUCG-CgCGGu-UUUCUgGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 11569 0.68 0.93725
Target:  5'- aGGCGGCGCa-CGAGAcgccGGCCAGCcUCa -3'
miRNA:   3'- gCCGUCGCGcgGUUUU----CUGGUUGaAG- -5'
28912 5' -52.9 NC_006146.1 + 147311 0.68 0.94207
Target:  5'- uGGgAGCGUGCaccuGGAAGACgCAGCUg- -3'
miRNA:   3'- gCCgUCGCGCGg---UUUUCUG-GUUGAag -5'
28912 5' -52.9 NC_006146.1 + 19449 0.68 0.94207
Target:  5'- -cGCGGCGCGCCGcuucguccuGGACaaCGACUUUg -3'
miRNA:   3'- gcCGUCGCGCGGUuu-------UCUG--GUUGAAG- -5'
28912 5' -52.9 NC_006146.1 + 105610 0.68 0.946644
Target:  5'- aGGCAGCGCaGCCAGGuccaCAGCcgCa -3'
miRNA:   3'- gCCGUCGCG-CGGUUUucugGUUGaaG- -5'
28912 5' -52.9 NC_006146.1 + 155154 0.68 0.946644
Target:  5'- -aGCAGCGgGCCA--GGGCCAcguuGCUg- -3'
miRNA:   3'- gcCGUCGCgCGGUuuUCUGGU----UGAag -5'
28912 5' -52.9 NC_006146.1 + 10989 0.68 0.946644
Target:  5'- aGGCGGCGCuGCCGGu-GACgGggguCUUCu -3'
miRNA:   3'- gCCGUCGCG-CGGUUuuCUGgUu---GAAG- -5'
28912 5' -52.9 NC_006146.1 + 12770 0.68 0.946644
Target:  5'- cCGGCGG-GCGCCAccAGGucCCAACa-- -3'
miRNA:   3'- -GCCGUCgCGCGGUuuUCU--GGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 15849 0.68 0.946644
Target:  5'- cCGGCGG-GCGCCAccAGGucCCAACa-- -3'
miRNA:   3'- -GCCGUCgCGCGGUuuUCU--GGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 18927 0.68 0.946644
Target:  5'- cCGGCGG-GCGCCAccAGGucCCAACa-- -3'
miRNA:   3'- -GCCGUCgCGCGGUuuUCU--GGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 22004 0.68 0.946644
Target:  5'- cCGGCGG-GCGCCAccAGGucCCAACa-- -3'
miRNA:   3'- -GCCGUCgCGCGGUuuUCU--GGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 25082 0.68 0.946644
Target:  5'- cCGGCGG-GCGCCAccAGGucCCAACa-- -3'
miRNA:   3'- -GCCGUCgCGCGGUuuUCU--GGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 159923 0.68 0.946644
Target:  5'- cCGGCAGCGcCGCCugcuuuAGGugCA-CUg- -3'
miRNA:   3'- -GCCGUCGC-GCGGuu----UUCugGUuGAag -5'
28912 5' -52.9 NC_006146.1 + 47608 0.68 0.946644
Target:  5'- uCGGCGGC-CGCCAGggaucgccgauAGGGCCAcgaGCcgUCu -3'
miRNA:   3'- -GCCGUCGcGCGGUU-----------UUCUGGU---UGa-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.