miRNA display CGI


Results 81 - 100 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28912 5' -52.9 NC_006146.1 + 10989 0.68 0.946644
Target:  5'- aGGCGGCGCuGCCGGu-GACgGggguCUUCu -3'
miRNA:   3'- gCCGUCGCG-CGGUUuuCUGgUu---GAAG- -5'
28912 5' -52.9 NC_006146.1 + 168495 0.67 0.950972
Target:  5'- aCGGuCGGgGgGCCG-GGGACCAACa-- -3'
miRNA:   3'- -GCC-GUCgCgCGGUuUUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 132465 0.67 0.950972
Target:  5'- aGGCAggggauGUGUGCCAGcaGAGGCCcGCUa- -3'
miRNA:   3'- gCCGU------CGCGCGGUU--UUCUGGuUGAag -5'
28912 5' -52.9 NC_006146.1 + 49746 0.67 0.950972
Target:  5'- gGGCGGUGC-CCAGGuAGAgCAGCUc- -3'
miRNA:   3'- gCCGUCGCGcGGUUU-UCUgGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 151465 0.67 0.950972
Target:  5'- -aGCGGCGCGCCGc--GuCCAcguugGCUUCg -3'
miRNA:   3'- gcCGUCGCGCGGUuuuCuGGU-----UGAAG- -5'
28912 5' -52.9 NC_006146.1 + 66576 0.67 0.950972
Target:  5'- aGGCGGCGCaggcagGCCGuGAGACCcAUa-- -3'
miRNA:   3'- gCCGUCGCG------CGGUuUUCUGGuUGaag -5'
28912 5' -52.9 NC_006146.1 + 127827 0.67 0.95506
Target:  5'- aGGgAGCGCGCCAGucG-CUGGCa-- -3'
miRNA:   3'- gCCgUCGCGCGGUUuuCuGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 48341 0.67 0.95506
Target:  5'- gGGCcaGGCGUccagucugGCCAGcGGGCCGGCcUCg -3'
miRNA:   3'- gCCG--UCGCG--------CGGUUuUCUGGUUGaAG- -5'
28912 5' -52.9 NC_006146.1 + 161771 0.67 0.95506
Target:  5'- aGGCAaCGCcCCGugGGAGACCGGCUcCa -3'
miRNA:   3'- gCCGUcGCGcGGU--UUUCUGGUUGAaG- -5'
28912 5' -52.9 NC_006146.1 + 14214 0.67 0.95506
Target:  5'- gCGGUGGCGCGCaacgcGGGCCuuCUg- -3'
miRNA:   3'- -GCCGUCGCGCGguuu-UCUGGuuGAag -5'
28912 5' -52.9 NC_006146.1 + 167648 0.67 0.95506
Target:  5'- cCGGC-GCGUGCCGGGGGcCCGgggGCgugUCc -3'
miRNA:   3'- -GCCGuCGCGCGGUUUUCuGGU---UGa--AG- -5'
28912 5' -52.9 NC_006146.1 + 122214 0.67 0.95506
Target:  5'- gGaGCGGCGgGCgaGGGAGGCCGGCg-- -3'
miRNA:   3'- gC-CGUCGCgCGg-UUUUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 136702 0.67 0.95778
Target:  5'- gGGCGGCGCgaggucccugccugGCCcAGGGuCCGGCUg- -3'
miRNA:   3'- gCCGUCGCG--------------CGGuUUUCuGGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 56130 0.67 0.95891
Target:  5'- uGGCcGCGgGCCccGAGACCGAg--- -3'
miRNA:   3'- gCCGuCGCgCGGuuUUCUGGUUgaag -5'
28912 5' -52.9 NC_006146.1 + 130224 0.67 0.95891
Target:  5'- aGGaCAGCGCGCCucAGAGcCCAccACcagUCu -3'
miRNA:   3'- gCC-GUCGCGCGGu-UUUCuGGU--UGa--AG- -5'
28912 5' -52.9 NC_006146.1 + 170604 0.67 0.95891
Target:  5'- uGGCgAGCGCGCC---GGGCCcGCc-- -3'
miRNA:   3'- gCCG-UCGCGCGGuuuUCUGGuUGaag -5'
28912 5' -52.9 NC_006146.1 + 128472 0.67 0.95891
Target:  5'- uGGCGGCGCGCac-----CCAGCUg- -3'
miRNA:   3'- gCCGUCGCGCGguuuucuGGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 55672 0.67 0.95891
Target:  5'- aGGCGGCGUu---GAAGGCCAGCa-- -3'
miRNA:   3'- gCCGUCGCGcgguUUUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 51738 0.67 0.95891
Target:  5'- aGGCGGCGC-CCcGAGG-UgGGCUUCu -3'
miRNA:   3'- gCCGUCGCGcGGuUUUCuGgUUGAAG- -5'
28912 5' -52.9 NC_006146.1 + 45589 0.67 0.95891
Target:  5'- aGGCGGCcUGCCucgcGAAGACgGACaUCu -3'
miRNA:   3'- gCCGUCGcGCGGu---UUUCUGgUUGaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.