miRNA display CGI


Results 21 - 40 of 193 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28912 5' -52.9 NC_006146.1 + 13057 0.66 0.97478
Target:  5'- aGGCGGCGCucgguGCCcGuccccuccGGGGCCAGCg-- -3'
miRNA:   3'- gCCGUCGCG-----CGGuU--------UUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 28247 0.66 0.97478
Target:  5'- uGGCuGCGauaGCCGAGcacGCCAuggGCUUCg -3'
miRNA:   3'- gCCGuCGCg--CGGUUUuc-UGGU---UGAAG- -5'
28912 5' -52.9 NC_006146.1 + 65075 0.66 0.97478
Target:  5'- uCGGCGGCGCgggGCagGAGGGGCCcuaUUCu -3'
miRNA:   3'- -GCCGUCGCG---CGg-UUUUCUGGuugAAG- -5'
28912 5' -52.9 NC_006146.1 + 104852 0.66 0.97478
Target:  5'- gGGCAggaacuuuGCGUGCCuGAggcauaaccacaGGACCAGCUcCa -3'
miRNA:   3'- gCCGU--------CGCGCGGuUU------------UCUGGUUGAaG- -5'
28912 5' -52.9 NC_006146.1 + 52977 0.66 0.97478
Target:  5'- cCGGUAGUGCGCaggcGGACCuGCc-- -3'
miRNA:   3'- -GCCGUCGCGCGguuuUCUGGuUGaag -5'
28912 5' -52.9 NC_006146.1 + 46978 0.66 0.974515
Target:  5'- cCGGCcGC-CGCCAGGaauugcgcccgucGGACCGGCa-- -3'
miRNA:   3'- -GCCGuCGcGCGGUUU-------------UCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 4544 0.66 0.974248
Target:  5'- cCGGCAGC-CGCCGAcuaccucccCCAGCUauUCa -3'
miRNA:   3'- -GCCGUCGcGCGGUUuucu-----GGUUGA--AG- -5'
28912 5' -52.9 NC_006146.1 + 167156 0.66 0.973979
Target:  5'- gGGCAcUGUGCCAGggccuucgggacggGAGGCCGGCg-- -3'
miRNA:   3'- gCCGUcGCGCGGUU--------------UUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 169952 0.66 0.973979
Target:  5'- gGGCAcUGUGCCAGggccuucgggacggGAGGCCGGCg-- -3'
miRNA:   3'- gCCGUcGCGCGGUU--------------UUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 169020 0.66 0.973979
Target:  5'- gGGCAcUGUGCCAGggccuucgggacggGAGGCCGGCg-- -3'
miRNA:   3'- gCCGUcGCGCGGUU--------------UUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 168088 0.66 0.973979
Target:  5'- gGGCAcUGUGCCAGggccuucgggacggGAGGCCGGCg-- -3'
miRNA:   3'- gCCGUcGCGCGGUU--------------UUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 1863 0.66 0.972037
Target:  5'- gGGC-GCGCGCCGgccucccgucccGAAGGCCcuGGCa-- -3'
miRNA:   3'- gCCGuCGCGCGGU------------UUUCUGG--UUGaag -5'
28912 5' -52.9 NC_006146.1 + 112004 0.66 0.972037
Target:  5'- -uGCAGguCGCGCCAAAagugggcguugcAGGCCucCUUCa -3'
miRNA:   3'- gcCGUC--GCGCGGUUU------------UCUGGuuGAAG- -5'
28912 5' -52.9 NC_006146.1 + 2795 0.66 0.972037
Target:  5'- gGGC-GCGCGCCGgccucccgucccGAAGGCCcuGGCa-- -3'
miRNA:   3'- gCCGuCGCGCGGU------------UUUCUGG--UUGaag -5'
28912 5' -52.9 NC_006146.1 + 931 0.66 0.972037
Target:  5'- gGGC-GCGCGCCGgccucccgucccGAAGGCCcuGGCa-- -3'
miRNA:   3'- gCCGuCGCGCGGU------------UUUCUGG--UUGaag -5'
28912 5' -52.9 NC_006146.1 + 117035 0.66 0.972037
Target:  5'- aCGGgGGCGCu---GAGGGCCAGCgUCg -3'
miRNA:   3'- -GCCgUCGCGcgguUUUCUGGUUGaAG- -5'
28912 5' -52.9 NC_006146.1 + 90055 0.66 0.972037
Target:  5'- gGGguGCGUuaugcacguggGCCAu--GGCCGugUUCu -3'
miRNA:   3'- gCCguCGCG-----------CGGUuuuCUGGUugAAG- -5'
28912 5' -52.9 NC_006146.1 + 86613 0.66 0.972037
Target:  5'- gGGCAGCuGgGCUuGAGGGgCAGCUg- -3'
miRNA:   3'- gCCGUCG-CgCGGuUUUCUgGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 40285 0.66 0.972037
Target:  5'- gGGCggaGGCGgGCCAaAGAGGCCGGg--- -3'
miRNA:   3'- gCCG---UCGCgCGGU-UUUCUGGUUgaag -5'
28912 5' -52.9 NC_006146.1 + 86545 0.66 0.972037
Target:  5'- gGGCAGCuGgGCUuGAGGGgCAGCUg- -3'
miRNA:   3'- gCCGUCG-CgCGGuUUUCUgGUUGAag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.