miRNA display CGI


Results 41 - 60 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28912 5' -52.9 NC_006146.1 + 1863 0.66 0.972037
Target:  5'- gGGC-GCGCGCCGgccucccgucccGAAGGCCcuGGCa-- -3'
miRNA:   3'- gCCGuCGCGCGGU------------UUUCUGG--UUGaag -5'
28912 5' -52.9 NC_006146.1 + 2795 0.66 0.972037
Target:  5'- gGGC-GCGCGCCGgccucccgucccGAAGGCCcuGGCa-- -3'
miRNA:   3'- gCCGuCGCGCGGU------------UUUCUGG--UUGaag -5'
28912 5' -52.9 NC_006146.1 + 86579 0.66 0.972037
Target:  5'- gGGCAGCuGgGCUuGAGGGgCAGCUg- -3'
miRNA:   3'- gCCGUCG-CgCGGuUUUCUgGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 86545 0.66 0.972037
Target:  5'- gGGCAGCuGgGCUuGAGGGgCAGCUg- -3'
miRNA:   3'- gCCGUCG-CgCGGuUUUCUgGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 40285 0.66 0.972037
Target:  5'- gGGCggaGGCGgGCCAaAGAGGCCGGg--- -3'
miRNA:   3'- gCCG---UCGCgCGGU-UUUCUGGUUgaag -5'
28912 5' -52.9 NC_006146.1 + 3727 0.66 0.972037
Target:  5'- gGGC-GCGCGCCGgccucccgucccGAAGGCCcuGGCa-- -3'
miRNA:   3'- gCCGuCGCGCGGU------------UUUCUGG--UUGaag -5'
28912 5' -52.9 NC_006146.1 + 112004 0.66 0.972037
Target:  5'- -uGCAGguCGCGCCAAAagugggcguugcAGGCCucCUUCa -3'
miRNA:   3'- gcCGUC--GCGCGGUUU------------UCUGGuuGAAG- -5'
28912 5' -52.9 NC_006146.1 + 42668 0.66 0.971751
Target:  5'- aGGUAGCggaagagcuccccGCGCCGAAAGAgcgucuggcCCGGCg-- -3'
miRNA:   3'- gCCGUCG-------------CGCGGUUUUCU---------GGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 33352 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 33445 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 33538 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 33631 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 35582 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 35675 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 34374 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 34281 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 34188 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 34002 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 33817 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 33724 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.