Results 61 - 80 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28912 | 5' | -52.9 | NC_006146.1 | + | 35024 | 0.66 | 0.971174 |
Target: 5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3' miRNA: 3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 35117 | 0.66 | 0.971174 |
Target: 5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3' miRNA: 3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 35303 | 0.66 | 0.971174 |
Target: 5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3' miRNA: 3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 34374 | 0.66 | 0.971174 |
Target: 5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3' miRNA: 3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 34281 | 0.66 | 0.971174 |
Target: 5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3' miRNA: 3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 33631 | 0.66 | 0.971174 |
Target: 5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3' miRNA: 3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 33724 | 0.66 | 0.971174 |
Target: 5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3' miRNA: 3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 33817 | 0.66 | 0.971174 |
Target: 5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3' miRNA: 3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 34002 | 0.66 | 0.971174 |
Target: 5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3' miRNA: 3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 34095 | 0.66 | 0.971174 |
Target: 5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3' miRNA: 3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 34188 | 0.66 | 0.971174 |
Target: 5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3' miRNA: 3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 35489 | 0.66 | 0.971174 |
Target: 5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3' miRNA: 3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 35210 | 0.66 | 0.971174 |
Target: 5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3' miRNA: 3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 170709 | 0.66 | 0.969085 |
Target: 5'- gGGCaccGGCGCGUagAGAAGACCcuUUUCc -3' miRNA: 3'- gCCG---UCGCGCGg-UUUUCUGGuuGAAG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 95529 | 0.66 | 0.969085 |
Target: 5'- uCGGguGCgGCGCCu---GGCCAGggUCc -3' miRNA: 3'- -GCCguCG-CGCGGuuuuCUGGUUgaAG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 42782 | 0.66 | 0.969085 |
Target: 5'- aGGCGGCGCgugGCCGccucGGCCAGgUUg -3' miRNA: 3'- gCCGUCGCG---CGGUuuu-CUGGUUgAAg -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 33910 | 0.66 | 0.968778 |
Target: 5'- cCGGCAGCGgcccggccaccccCGCCGGAgcGGGgCAGCg-- -3' miRNA: 3'- -GCCGUCGC-------------GCGGUUU--UCUgGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 98446 | 0.67 | 0.965917 |
Target: 5'- cCGGUuucGGCGcCGCCcGGGGGCCAGucUCu -3' miRNA: 3'- -GCCG---UCGC-GCGGuUUUCUGGUUgaAG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 155720 | 0.67 | 0.965917 |
Target: 5'- aGGCGGC-CGCgCAGucGGCCuucagcGCUUCc -3' miRNA: 3'- gCCGUCGcGCG-GUUuuCUGGu-----UGAAG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 137734 | 0.67 | 0.965917 |
Target: 5'- gCGGCGGCGCGgCGGu-GcCCAGCc-- -3' miRNA: 3'- -GCCGUCGCGCgGUUuuCuGGUUGaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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