miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28912 5' -52.9 NC_006146.1 + 931 0.66 0.972037
Target:  5'- gGGC-GCGCGCCGgccucccgucccGAAGGCCcuGGCa-- -3'
miRNA:   3'- gCCGuCGCGCGGU------------UUUCUGG--UUGaag -5'
28912 5' -52.9 NC_006146.1 + 1863 0.66 0.972037
Target:  5'- gGGC-GCGCGCCGgccucccgucccGAAGGCCcuGGCa-- -3'
miRNA:   3'- gCCGuCGCGCGGU------------UUUCUGG--UUGaag -5'
28912 5' -52.9 NC_006146.1 + 2795 0.66 0.972037
Target:  5'- gGGC-GCGCGCCGgccucccgucccGAAGGCCcuGGCa-- -3'
miRNA:   3'- gCCGuCGCGCGGU------------UUUCUGG--UUGaag -5'
28912 5' -52.9 NC_006146.1 + 2849 0.73 0.70265
Target:  5'- gGaGCGGgGUGCCGGuuguGGCCGGCUUCu -3'
miRNA:   3'- gC-CGUCgCGCGGUUuu--CUGGUUGAAG- -5'
28912 5' -52.9 NC_006146.1 + 3727 0.66 0.972037
Target:  5'- gGGC-GCGCGCCGgccucccgucccGAAGGCCcuGGCa-- -3'
miRNA:   3'- gCCGuCGCGCGGU------------UUUCUGG--UUGaag -5'
28912 5' -52.9 NC_006146.1 + 4544 0.66 0.974248
Target:  5'- cCGGCAGC-CGCCGAcuaccucccCCAGCUauUCa -3'
miRNA:   3'- -GCCGUCGcGCGGUUuucu-----GGUUGA--AG- -5'
28912 5' -52.9 NC_006146.1 + 8527 0.72 0.791315
Target:  5'- gGGCgcgGGCGCGCCAAGGGGCUc----- -3'
miRNA:   3'- gCCG---UCGCGCGGUUUUCUGGuugaag -5'
28912 5' -52.9 NC_006146.1 + 10734 0.69 0.908785
Target:  5'- gGGCAGCcagaGCCAGccGGGGCCAugcggcuacaucuACUUCu -3'
miRNA:   3'- gCCGUCGcg--CGGUU--UUCUGGU-------------UGAAG- -5'
28912 5' -52.9 NC_006146.1 + 10989 0.68 0.946644
Target:  5'- aGGCGGCGCuGCCGGu-GACgGggguCUUCu -3'
miRNA:   3'- gCCGUCGCG-CGGUUuuCUGgUu---GAAG- -5'
28912 5' -52.9 NC_006146.1 + 11569 0.68 0.93725
Target:  5'- aGGCGGCGCa-CGAGAcgccGGCCAGCcUCa -3'
miRNA:   3'- gCCGUCGCGcgGUUUU----CUGGUUGaAG- -5'
28912 5' -52.9 NC_006146.1 + 12770 0.68 0.946644
Target:  5'- cCGGCGG-GCGCCAccAGGucCCAACa-- -3'
miRNA:   3'- -GCCGUCgCGCGGUuuUCU--GGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 13057 0.66 0.97478
Target:  5'- aGGCGGCGCucgguGCCcGuccccuccGGGGCCAGCg-- -3'
miRNA:   3'- gCCGUCGCG-----CGGuU--------UUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 14214 0.67 0.95506
Target:  5'- gCGGUGGCGCGCaacgcGGGCCuuCUg- -3'
miRNA:   3'- -GCCGUCGCGCGguuu-UCUGGuuGAag -5'
28912 5' -52.9 NC_006146.1 + 14813 0.7 0.875423
Target:  5'- uGGCAGCaucagaGCGCCAGAAGcCCAc---- -3'
miRNA:   3'- gCCGUCG------CGCGGUUUUCuGGUugaag -5'
28912 5' -52.9 NC_006146.1 + 15147 0.66 0.979444
Target:  5'- gGGUcuacagcuccucgGGCGaCGCCGuggaagcgcuGAAGGCCGACUg- -3'
miRNA:   3'- gCCG-------------UCGC-GCGGU----------UUUCUGGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 15849 0.68 0.946644
Target:  5'- cCGGCGG-GCGCCAccAGGucCCAACa-- -3'
miRNA:   3'- -GCCGUCgCGCGGUuuUCU--GGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 15879 0.7 0.860206
Target:  5'- --aCAGCGUGCCGGAGGGCUcGCUg- -3'
miRNA:   3'- gccGUCGCGCGGUUUUCUGGuUGAag -5'
28912 5' -52.9 NC_006146.1 + 16265 1.09 0.005578
Target:  5'- gCGGCAGCGCGCCAAAAGACCAACUUCc -3'
miRNA:   3'- -GCCGUCGCGCGGUUUUCUGGUUGAAG- -5'
28912 5' -52.9 NC_006146.1 + 17891 0.7 0.875423
Target:  5'- uGGCAGCaucagaGCGCCAGAAGcCCAc---- -3'
miRNA:   3'- gCCGUCG------CGCGGUUUUCuGGUugaag -5'
28912 5' -52.9 NC_006146.1 + 18927 0.68 0.946644
Target:  5'- cCGGCGG-GCGCCAccAGGucCCAACa-- -3'
miRNA:   3'- -GCCGUCgCGCGGUuuUCU--GGUUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.