miRNA display CGI


Results 21 - 40 of 193 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28912 5' -52.9 NC_006146.1 + 19137 0.66 0.977323
Target:  5'- gGGCAgGCGCaagGCUGAcGGGGCCAGCg-- -3'
miRNA:   3'- gCCGU-CGCG---CGGUU-UUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 19190 0.67 0.965588
Target:  5'- aGGCcuacuucuacgcaGGCGCGCCucAGGGCCugGACg-- -3'
miRNA:   3'- gCCG-------------UCGCGCGGuuUUCUGG--UUGaag -5'
28912 5' -52.9 NC_006146.1 + 19449 0.68 0.94207
Target:  5'- -cGCGGCGCGCCGcuucguccuGGACaaCGACUUUg -3'
miRNA:   3'- gcCGUCGCGCGGUuu-------UCUG--GUUGAAG- -5'
28912 5' -52.9 NC_006146.1 + 20728 0.76 0.546792
Target:  5'- uGGCGGCcugcgaggacccGCGCCAAAAGACCAucCUg- -3'
miRNA:   3'- gCCGUCG------------CGCGGUUUUCUGGUu-GAag -5'
28912 5' -52.9 NC_006146.1 + 20968 0.7 0.875423
Target:  5'- uGGCAGCaucagaGCGCCAGAAGcCCAc---- -3'
miRNA:   3'- gCCGUCG------CGCGGUUUUCuGGUugaag -5'
28912 5' -52.9 NC_006146.1 + 21948 0.71 0.809616
Target:  5'- aGGCc-CGCGCCAuuGGGGCCAGCa-- -3'
miRNA:   3'- gCCGucGCGCGGUu-UUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 22004 0.68 0.946644
Target:  5'- cCGGCGG-GCGCCAccAGGucCCAACa-- -3'
miRNA:   3'- -GCCGUCgCGCGGUuuUCU--GGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 23782 0.67 0.962527
Target:  5'- gCGGCcuGCGCGUCu-GGGGCCcGCUg- -3'
miRNA:   3'- -GCCGu-CGCGCGGuuUUCUGGuUGAag -5'
28912 5' -52.9 NC_006146.1 + 24046 0.7 0.875423
Target:  5'- uGGCAGCaucagaGCGCCAGAAGcCCAc---- -3'
miRNA:   3'- gCCGUCG------CGCGGUUUUCuGGUugaag -5'
28912 5' -52.9 NC_006146.1 + 25082 0.68 0.946644
Target:  5'- cCGGCGG-GCGCCAccAGGucCCAACa-- -3'
miRNA:   3'- -GCCGUCgCGCGGUuuUCU--GGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 27124 0.7 0.875423
Target:  5'- uGGCAGCaucagaGCGCCAGAAGcCCAc---- -3'
miRNA:   3'- gCCGUCG------CGCGGUUUUCuGGUugaag -5'
28912 5' -52.9 NC_006146.1 + 28160 0.68 0.946644
Target:  5'- cCGGCGG-GCGCCAccAGGucCCAACa-- -3'
miRNA:   3'- -GCCGUCgCGCGGUuuUCU--GGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 28247 0.66 0.97478
Target:  5'- uGGCuGCGauaGCCGAGcacGCCAuggGCUUCg -3'
miRNA:   3'- gCCGuCGCg--CGGUUUuc-UGGU---UGAAG- -5'
28912 5' -52.9 NC_006146.1 + 33352 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 33445 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 33538 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 33631 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 33724 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 33817 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 33910 0.66 0.968778
Target:  5'- cCGGCAGCGgcccggccaccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC-------------GCGGUUU--UCUgGUUGaag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.