miRNA display CGI


Results 41 - 60 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28912 5' -52.9 NC_006146.1 + 34002 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 34095 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 34188 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 34281 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 34374 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 34467 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 34560 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 34653 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 34746 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 34839 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 34931 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 35024 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 35117 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 35210 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 35303 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 35396 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 35489 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 35582 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 35675 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 39699 0.68 0.926862
Target:  5'- -uGCAGCGCcgcuCCGGAGGcagaggccugcACCAGCUUCu -3'
miRNA:   3'- gcCGUCGCGc---GGUUUUC-----------UGGUUGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.