miRNA display CGI


Results 61 - 80 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28912 5' -52.9 NC_006146.1 + 40285 0.66 0.972037
Target:  5'- gGGCggaGGCGgGCCAaAGAGGCCGGg--- -3'
miRNA:   3'- gCCG---UCGCgCGGU-UUUCUGGUUgaag -5'
28912 5' -52.9 NC_006146.1 + 41225 0.72 0.791315
Target:  5'- aGGCGGCGC-UgAAGAGACCGGCc-- -3'
miRNA:   3'- gCCGUCGCGcGgUUUUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 42440 0.68 0.932181
Target:  5'- uGGguGCGCGCC-----GCCAGCa-- -3'
miRNA:   3'- gCCguCGCGCGGuuuucUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 42668 0.66 0.971751
Target:  5'- aGGUAGCggaagagcuccccGCGCCGAAAGAgcgucuggcCCGGCg-- -3'
miRNA:   3'- gCCGUCG-------------CGCGGUUUUCU---------GGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 42782 0.66 0.969085
Target:  5'- aGGCGGCGCgugGCCGccucGGCCAGgUUg -3'
miRNA:   3'- gCCGUCGCG---CGGUuuu-CUGGUUgAAg -5'
28912 5' -52.9 NC_006146.1 + 43278 0.68 0.921292
Target:  5'- aGGCAGCGgGCCGGcGGugCcGCc-- -3'
miRNA:   3'- gCCGUCGCgCGGUUuUCugGuUGaag -5'
28912 5' -52.9 NC_006146.1 + 43320 0.67 0.962527
Target:  5'- cCGGcCGGCGCgGCCucggccgcccAGGGCCAGCa-- -3'
miRNA:   3'- -GCC-GUCGCG-CGGuu--------UUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 44027 0.66 0.972037
Target:  5'- aGGgGGCG-GCCGAGGGcCCcGCUUUu -3'
miRNA:   3'- gCCgUCGCgCGGUUUUCuGGuUGAAG- -5'
28912 5' -52.9 NC_006146.1 + 45589 0.67 0.95891
Target:  5'- aGGCGGCcUGCCucgcGAAGACgGACaUCu -3'
miRNA:   3'- gCCGUCGcGCGGu---UUUCUGgUUGaAG- -5'
28912 5' -52.9 NC_006146.1 + 46454 0.73 0.743105
Target:  5'- gCGGCGGCGUagGCCGGAugcgugccGACCAGCa-- -3'
miRNA:   3'- -GCCGUCGCG--CGGUUUu-------CUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 46978 0.66 0.974515
Target:  5'- cCGGCcGC-CGCCAGGaauugcgcccgucGGACCGGCa-- -3'
miRNA:   3'- -GCCGuCGcGCGGUUU-------------UCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 47608 0.68 0.946644
Target:  5'- uCGGCGGC-CGCCAGggaucgccgauAGGGCCAcgaGCcgUCu -3'
miRNA:   3'- -GCCGUCGcGCGGUU-----------UUCUGGU---UGa-AG- -5'
28912 5' -52.9 NC_006146.1 + 48341 0.67 0.95506
Target:  5'- gGGCcaGGCGUccagucugGCCAGcGGGCCGGCcUCg -3'
miRNA:   3'- gCCG--UCGCG--------CGGUUuUCUGGUUGaAG- -5'
28912 5' -52.9 NC_006146.1 + 49501 0.69 0.889731
Target:  5'- gGGCGGCGUGgCAucuGGAUCGGCg-- -3'
miRNA:   3'- gCCGUCGCGCgGUuu-UCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 49746 0.67 0.950972
Target:  5'- gGGCGGUGC-CCAGGuAGAgCAGCUc- -3'
miRNA:   3'- gCCGUCGCGcGGUUU-UCUgGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 50970 0.72 0.772414
Target:  5'- cCGGCAGCaGCGCCGcu--GCCAACa-- -3'
miRNA:   3'- -GCCGUCG-CGCGGUuuucUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 51578 0.74 0.650751
Target:  5'- aGGCGGCGCgGCCGAAGGGggGACUg- -3'
miRNA:   3'- gCCGUCGCG-CGGUUUUCUggUUGAag -5'
28912 5' -52.9 NC_006146.1 + 51738 0.67 0.95891
Target:  5'- aGGCGGCGC-CCcGAGG-UgGGCUUCu -3'
miRNA:   3'- gCCGUCGCGcGGuUUUCuGgUUGAAG- -5'
28912 5' -52.9 NC_006146.1 + 51947 0.68 0.926862
Target:  5'- gCGGUcuGCGCGCCAAcuGGcGCCGACg-- -3'
miRNA:   3'- -GCCGu-CGCGCGGUUu-UC-UGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 52023 0.66 0.977077
Target:  5'- aGGCAGUccGCgGCgGAGGGGCUguuucauAGCUUCg -3'
miRNA:   3'- gCCGUCG--CG-CGgUUUUCUGG-------UUGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.