miRNA display CGI


Results 81 - 100 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28912 5' -52.9 NC_006146.1 + 52977 0.66 0.97478
Target:  5'- cCGGUAGUGCGCaggcGGACCuGCc-- -3'
miRNA:   3'- -GCCGUCGCGCGguuuUCUGGuUGaag -5'
28912 5' -52.9 NC_006146.1 + 52987 0.68 0.93725
Target:  5'- gGGCGG-GCGUCucGAGGCCccuCUUCu -3'
miRNA:   3'- gCCGUCgCGCGGuuUUCUGGuu-GAAG- -5'
28912 5' -52.9 NC_006146.1 + 53167 0.75 0.608893
Target:  5'- gCGGCGGUG-GCCGGAAGGCuCGGCcUCg -3'
miRNA:   3'- -GCCGUCGCgCGGUUUUCUG-GUUGaAG- -5'
28912 5' -52.9 NC_006146.1 + 53209 0.73 0.743105
Target:  5'- gGGCGGCGUGCCAAAcuccgcGGGCCuucccucuCUUUc -3'
miRNA:   3'- gCCGUCGCGCGGUUU------UCUGGuu------GAAG- -5'
28912 5' -52.9 NC_006146.1 + 53523 0.73 0.701623
Target:  5'- gGGCcGCGCGUguGAAGGCCGcgaggaccgagggGCUUCu -3'
miRNA:   3'- gCCGuCGCGCGguUUUCUGGU-------------UGAAG- -5'
28912 5' -52.9 NC_006146.1 + 53741 0.67 0.962527
Target:  5'- -cGCGGCuGCGCCGgggcGAAGACgGGCggCg -3'
miRNA:   3'- gcCGUCG-CGCGGU----UUUCUGgUUGaaG- -5'
28912 5' -52.9 NC_006146.1 + 54790 0.67 0.962527
Target:  5'- aGGgAGCGCGCCuu--GGgCAGCUc- -3'
miRNA:   3'- gCCgUCGCGCGGuuuuCUgGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 55672 0.67 0.95891
Target:  5'- aGGCGGCGUu---GAAGGCCAGCa-- -3'
miRNA:   3'- gCCGUCGCGcgguUUUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 55763 0.76 0.56629
Target:  5'- cCGGCGGCGgGCCAGgggcagcGAGGCCAccacGCUg- -3'
miRNA:   3'- -GCCGUCGCgCGGUU-------UUCUGGU----UGAag -5'
28912 5' -52.9 NC_006146.1 + 56130 0.67 0.95891
Target:  5'- uGGCcGCGgGCCccGAGACCGAg--- -3'
miRNA:   3'- gCCGuCGCgCGGuuUUCUGGUUgaag -5'
28912 5' -52.9 NC_006146.1 + 56490 0.66 0.979671
Target:  5'- gCGGCaucAGCGCGCgCAGucGGGCC-GCggggUCg -3'
miRNA:   3'- -GCCG---UCGCGCG-GUUu-UCUGGuUGa---AG- -5'
28912 5' -52.9 NC_006146.1 + 57092 0.7 0.860206
Target:  5'- aCGaGCGGCGCGUCcu--GGCCAGCg-- -3'
miRNA:   3'- -GC-CGUCGCGCGGuuuuCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 57299 0.66 0.977323
Target:  5'- gGGCAG-GCGaCgGAGAGACUGGCg-- -3'
miRNA:   3'- gCCGUCgCGC-GgUUUUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 57374 0.7 0.852271
Target:  5'- gCGGCGGUgGCGCCGGuGGGCUGGCc-- -3'
miRNA:   3'- -GCCGUCG-CGCGGUUuUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 58121 0.66 0.975044
Target:  5'- aGGCaggagAGCGUGCCucAuuuuuacaugcgccuGGCCGGCUUCu -3'
miRNA:   3'- gCCG-----UCGCGCGGuuUu--------------CUGGUUGAAG- -5'
28912 5' -52.9 NC_006146.1 + 58209 0.66 0.979671
Target:  5'- -uGCuGCGgGCCAGacccgagaucGAGACCGACa-- -3'
miRNA:   3'- gcCGuCGCgCGGUU----------UUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 60462 0.71 0.82203
Target:  5'- gCGGCAGgcCGCggggagcggugagagGCCGGGGGGCCAGCUc- -3'
miRNA:   3'- -GCCGUC--GCG---------------CGGUUUUCUGGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 64429 0.72 0.752989
Target:  5'- aCGGCGGCGUacgcuGCCAGGAGACagaggGGCUg- -3'
miRNA:   3'- -GCCGUCGCG-----CGGUUUUCUGg----UUGAag -5'
28912 5' -52.9 NC_006146.1 + 65068 0.66 0.979671
Target:  5'- uGGCAGCGCcuccggaugucgGCC-GGGGACCccuggGugUUCu -3'
miRNA:   3'- gCCGUCGCG------------CGGuUUUCUGG-----UugAAG- -5'
28912 5' -52.9 NC_006146.1 + 65075 0.66 0.97478
Target:  5'- uCGGCGGCGCgggGCagGAGGGGCCcuaUUCu -3'
miRNA:   3'- -GCCGUCGCG---CGg-UUUUCUGGuugAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.