miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28912 5' -52.9 NC_006146.1 + 170709 0.66 0.969085
Target:  5'- gGGCaccGGCGCGUagAGAAGACCcuUUUCc -3'
miRNA:   3'- gCCG---UCGCGCGg-UUUUCUGGuuGAAG- -5'
28912 5' -52.9 NC_006146.1 + 170604 0.67 0.95891
Target:  5'- uGGCgAGCGCGCC---GGGCCcGCc-- -3'
miRNA:   3'- gCCG-UCGCGCGGuuuUCUGGuUGaag -5'
28912 5' -52.9 NC_006146.1 + 170443 0.73 0.70265
Target:  5'- cCGGC-GCGUGCCGGGGGACCcgggGGCgugUCc -3'
miRNA:   3'- -GCCGuCGCGCGGUUUUCUGG----UUGa--AG- -5'
28912 5' -52.9 NC_006146.1 + 170195 0.66 0.972037
Target:  5'- gGGCGGgGCcgggGCCuggcGGGGGCCAGCg-- -3'
miRNA:   3'- gCCGUCgCG----CGGu---UUUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 170072 0.69 0.915473
Target:  5'- gGGCcGCGCGUgGGGAuGGCCGGCg-- -3'
miRNA:   3'- gCCGuCGCGCGgUUUU-CUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 169952 0.66 0.973979
Target:  5'- gGGCAcUGUGCCAGggccuucgggacggGAGGCCGGCg-- -3'
miRNA:   3'- gCCGUcGCGCGGUU--------------UUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 169778 0.66 0.979671
Target:  5'- gGGCaccGGCGCGUgGAGaAGACC--CUUCu -3'
miRNA:   3'- gCCG---UCGCGCGgUUU-UCUGGuuGAAG- -5'
28912 5' -52.9 NC_006146.1 + 169512 0.73 0.70265
Target:  5'- cCGGC-GCGUGCCGGGGGACCcgggGGCgugUCc -3'
miRNA:   3'- -GCCGuCGCGCGGUUUUCUGG----UUGa--AG- -5'
28912 5' -52.9 NC_006146.1 + 169264 0.66 0.972037
Target:  5'- gGGCGGgGCcgggGCCuggcGGGGGCCAGCg-- -3'
miRNA:   3'- gCCGUCgCG----CGGu---UUUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 169140 0.69 0.915473
Target:  5'- gGGCcGCGCGUgGGGAuGGCCGGCg-- -3'
miRNA:   3'- gCCGuCGCGCGgUUUU-CUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 169020 0.66 0.973979
Target:  5'- gGGCAcUGUGCCAGggccuucgggacggGAGGCCGGCg-- -3'
miRNA:   3'- gCCGUcGCGCGGUU--------------UUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 168846 0.66 0.979671
Target:  5'- gGGCaccGGCGCGUgGAGaAGACC--CUUCu -3'
miRNA:   3'- gCCG---UCGCGCGgUUU-UCUGGuuGAAG- -5'
28912 5' -52.9 NC_006146.1 + 168580 0.73 0.70265
Target:  5'- cCGGC-GCGUGCCGGGGGACCcgggGGCgugUCc -3'
miRNA:   3'- -GCCGuCGCGCGGUUUUCUGG----UUGa--AG- -5'
28912 5' -52.9 NC_006146.1 + 168495 0.67 0.950972
Target:  5'- aCGGuCGGgGgGCCG-GGGACCAACa-- -3'
miRNA:   3'- -GCC-GUCgCgCGGUuUUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 168332 0.66 0.972037
Target:  5'- gGGCGGgGCcgggGCCuggcGGGGGCCAGCg-- -3'
miRNA:   3'- gCCGUCgCG----CGGu---UUUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 168208 0.69 0.915473
Target:  5'- gGGCcGCGCGUgGGGAuGGCCGGCg-- -3'
miRNA:   3'- gCCGuCGCGCGgUUUU-CUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 168088 0.66 0.973979
Target:  5'- gGGCAcUGUGCCAGggccuucgggacggGAGGCCGGCg-- -3'
miRNA:   3'- gCCGUcGCGCGGUU--------------UUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 167914 0.66 0.979671
Target:  5'- gGGCaccGGCGCGUgGAGaAGACC--CUUCu -3'
miRNA:   3'- gCCG---UCGCGCGgUUU-UCUGGuuGAAG- -5'
28912 5' -52.9 NC_006146.1 + 167648 0.67 0.95506
Target:  5'- cCGGC-GCGUGCCGGGGGcCCGgggGCgugUCc -3'
miRNA:   3'- -GCCGuCGCGCGGUUUUCuGGU---UGa--AG- -5'
28912 5' -52.9 NC_006146.1 + 167400 0.66 0.972037
Target:  5'- gGGCGGgGCcgggGCCuggcGGGGGCCAGCg-- -3'
miRNA:   3'- gCCGUCgCG----CGGu---UUUCUGGUUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.