miRNA display CGI


Results 41 - 60 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28912 5' -52.9 NC_006146.1 + 147169 0.69 0.90309
Target:  5'- cCGGCGGCgGCGC----AGACCGGCg-- -3'
miRNA:   3'- -GCCGUCG-CGCGguuuUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 146752 0.69 0.896531
Target:  5'- aGGCGGaCGaCGCC-AGAGGCCGAg-UCa -3'
miRNA:   3'- gCCGUC-GC-GCGGuUUUCUGGUUgaAG- -5'
28912 5' -52.9 NC_006146.1 + 145534 0.66 0.979671
Target:  5'- gGGCGGC-CGCCuuGGGGCCcggagUCu -3'
miRNA:   3'- gCCGUCGcGCGGuuUUCUGGuuga-AG- -5'
28912 5' -52.9 NC_006146.1 + 143558 0.66 0.980339
Target:  5'- cCGGCcuuGcCGCGCCAcccgcuguuuuugGAGGGCCAGuugaagcaggcauguCUUCa -3'
miRNA:   3'- -GCCGu--C-GCGCGGU-------------UUUCUGGUU---------------GAAG- -5'
28912 5' -52.9 NC_006146.1 + 142456 0.66 0.979671
Target:  5'- gGGCGGC-CGCCuuGGGGCCcggagUCu -3'
miRNA:   3'- gCCGUCGcGCGGuuUUCUGGuuga-AG- -5'
28912 5' -52.9 NC_006146.1 + 137734 0.67 0.965917
Target:  5'- gCGGCGGCGCGgCGGu-GcCCAGCc-- -3'
miRNA:   3'- -GCCGUCGCGCgGUUuuCuGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 136702 0.67 0.95778
Target:  5'- gGGCGGCGCgaggucccugccugGCCcAGGGuCCGGCUg- -3'
miRNA:   3'- gCCGUCGCG--------------CGGuUUUCuGGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 132465 0.67 0.950972
Target:  5'- aGGCAggggauGUGUGCCAGcaGAGGCCcGCUa- -3'
miRNA:   3'- gCCGU------CGCGCGGUU--UUCUGGuUGAag -5'
28912 5' -52.9 NC_006146.1 + 131689 0.69 0.909405
Target:  5'- aGGguGuCGCGuCCA--AGGCCGACUa- -3'
miRNA:   3'- gCCguC-GCGC-GGUuuUCUGGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 130534 0.69 0.915473
Target:  5'- gGGCGGCGa-CCAGGGGGCCuuCUcCg -3'
miRNA:   3'- gCCGUCGCgcGGUUUUCUGGuuGAaG- -5'
28912 5' -52.9 NC_006146.1 + 130224 0.67 0.95891
Target:  5'- aGGaCAGCGCGCCucAGAGcCCAccACcagUCu -3'
miRNA:   3'- gCC-GUCGCGCGGu-UUUCuGGU--UGa--AG- -5'
28912 5' -52.9 NC_006146.1 + 129336 0.71 0.835782
Target:  5'- uCGcGCAGCGCGCgGAgcGGCCGG-UUCu -3'
miRNA:   3'- -GC-CGUCGCGCGgUUuuCUGGUUgAAG- -5'
28912 5' -52.9 NC_006146.1 + 128472 0.67 0.95891
Target:  5'- uGGCGGCGCGCac-----CCAGCUg- -3'
miRNA:   3'- gCCGUCGCGCGguuuucuGGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 128282 0.7 0.860206
Target:  5'- aCGGCGGCG-GCCGAGcc-CCAgGCUUCg -3'
miRNA:   3'- -GCCGUCGCgCGGUUUucuGGU-UGAAG- -5'
28912 5' -52.9 NC_006146.1 + 127827 0.67 0.95506
Target:  5'- aGGgAGCGCGCCAGucG-CUGGCa-- -3'
miRNA:   3'- gCCgUCGCGCGGUUuuCuGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 127069 0.71 0.844127
Target:  5'- uGGCGGCGCgggaaGCCGAAAgGGCCAggGCg-- -3'
miRNA:   3'- gCCGUCGCG-----CGGUUUU-CUGGU--UGaag -5'
28912 5' -52.9 NC_006146.1 + 126321 0.71 0.827243
Target:  5'- aGGCAGCG-GCCcGGGGGCCAGg--- -3'
miRNA:   3'- gCCGUCGCgCGGuUUUCUGGUUgaag -5'
28912 5' -52.9 NC_006146.1 + 125732 0.69 0.896531
Target:  5'- aGGcCAG-GUGCuCAAAGGACCAGCg-- -3'
miRNA:   3'- gCC-GUCgCGCG-GUUUUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 123936 0.68 0.926862
Target:  5'- uGGCGGCG-GCC---GGGCCGGCg-- -3'
miRNA:   3'- gCCGUCGCgCGGuuuUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 123148 0.67 0.962527
Target:  5'- aGGCcguacucgccagGGCGCGCgAGGAGGCCccgGACg-- -3'
miRNA:   3'- gCCG------------UCGCGCGgUUUUCUGG---UUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.