miRNA display CGI


Results 61 - 80 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28912 5' -52.9 NC_006146.1 + 122328 0.68 0.93725
Target:  5'- uGGCucuUGUGCCAGGGGGCCGAgcUCa -3'
miRNA:   3'- gCCGuc-GCGCGGUUUUCUGGUUgaAG- -5'
28912 5' -52.9 NC_006146.1 + 122214 0.67 0.95506
Target:  5'- gGaGCGGCGgGCgaGGGAGGCCGGCg-- -3'
miRNA:   3'- gC-CGUCGCgCGg-UUUUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 122027 0.72 0.800545
Target:  5'- aGGCgcaGGCcugGCGCCuGGAGGCCGacgGCUUCg -3'
miRNA:   3'- gCCG---UCG---CGCGGuUUUCUGGU---UGAAG- -5'
28912 5' -52.9 NC_006146.1 + 119811 0.77 0.513471
Target:  5'- cCGGCAGCGCaaggcgggggaccgGCCAGAGGACCugGAgaUCa -3'
miRNA:   3'- -GCCGUCGCG--------------CGGUUUUCUGG--UUgaAG- -5'
28912 5' -52.9 NC_006146.1 + 118240 0.67 0.962527
Target:  5'- aGGCGGCuGCGCaCGuacugggggccAGAGcCCAugUUCu -3'
miRNA:   3'- gCCGUCG-CGCG-GU-----------UUUCuGGUugAAG- -5'
28912 5' -52.9 NC_006146.1 + 117874 0.7 0.882693
Target:  5'- uCGGCGGCG-GCCGc--GGCCAGCcgCg -3'
miRNA:   3'- -GCCGUCGCgCGGUuuuCUGGUUGaaG- -5'
28912 5' -52.9 NC_006146.1 + 117035 0.66 0.972037
Target:  5'- aCGGgGGCGCu---GAGGGCCAGCgUCg -3'
miRNA:   3'- -GCCgUCGCGcgguUUUCUGGUUGaAG- -5'
28912 5' -52.9 NC_006146.1 + 115364 0.67 0.962527
Target:  5'- aGGCAGCGCGUCcccucgGGGAGuUgGACUUUu -3'
miRNA:   3'- gCCGUCGCGCGG------UUUUCuGgUUGAAG- -5'
28912 5' -52.9 NC_006146.1 + 112004 0.66 0.972037
Target:  5'- -uGCAGguCGCGCCAAAagugggcguugcAGGCCucCUUCa -3'
miRNA:   3'- gcCGUC--GCGCGGUUU------------UCUGGuuGAAG- -5'
28912 5' -52.9 NC_006146.1 + 111899 0.67 0.962527
Target:  5'- aGGCAGCGCGggaggCAGAuguuGGCCAGgUUg -3'
miRNA:   3'- gCCGUCGCGCg----GUUUu---CUGGUUgAAg -5'
28912 5' -52.9 NC_006146.1 + 109848 0.74 0.68201
Target:  5'- gGGUGGUGUGCCAuagaggggagGGAGACCGAUaUCg -3'
miRNA:   3'- gCCGUCGCGCGGU----------UUUCUGGUUGaAG- -5'
28912 5' -52.9 NC_006146.1 + 108881 0.72 0.781935
Target:  5'- gCGGCAGaggccgaGCGCCGc--GGCCAGCgagUCa -3'
miRNA:   3'- -GCCGUCg------CGCGGUuuuCUGGUUGa--AG- -5'
28912 5' -52.9 NC_006146.1 + 108364 0.71 0.835782
Target:  5'- aGGgAGUGCugGCCAGGAGACCGAg--- -3'
miRNA:   3'- gCCgUCGCG--CGGUUUUCUGGUUgaag -5'
28912 5' -52.9 NC_006146.1 + 105610 0.68 0.946644
Target:  5'- aGGCAGCGCaGCCAGGuccaCAGCcgCa -3'
miRNA:   3'- gCCGUCGCG-CGGUUUucugGUUGaaG- -5'
28912 5' -52.9 NC_006146.1 + 104852 0.66 0.97478
Target:  5'- gGGCAggaacuuuGCGUGCCuGAggcauaaccacaGGACCAGCUcCa -3'
miRNA:   3'- gCCGU--------CGCGCGGuUU------------UCUGGUUGAaG- -5'
28912 5' -52.9 NC_006146.1 + 101475 0.71 0.827243
Target:  5'- gGGuCAGCGUcaGCCu---GACCAACUUUg -3'
miRNA:   3'- gCC-GUCGCG--CGGuuuuCUGGUUGAAG- -5'
28912 5' -52.9 NC_006146.1 + 99222 0.72 0.800545
Target:  5'- gCGGCcucGGCGCGCCc---GACCAccgucucggGCUUCu -3'
miRNA:   3'- -GCCG---UCGCGCGGuuuuCUGGU---------UGAAG- -5'
28912 5' -52.9 NC_006146.1 + 99160 0.74 0.650751
Target:  5'- cCGGCAG-GUGgCGGAGGGCCAGCUc- -3'
miRNA:   3'- -GCCGUCgCGCgGUUUUCUGGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 98446 0.67 0.965917
Target:  5'- cCGGUuucGGCGcCGCCcGGGGGCCAGucUCu -3'
miRNA:   3'- -GCCG---UCGC-GCGGuUUUCUGGUUgaAG- -5'
28912 5' -52.9 NC_006146.1 + 95529 0.66 0.969085
Target:  5'- uCGGguGCgGCGCCu---GGCCAGggUCc -3'
miRNA:   3'- -GCCguCG-CGCGGuuuuCUGGUUgaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.