miRNA display CGI


Results 81 - 100 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28912 5' -52.9 NC_006146.1 + 92449 0.7 0.882693
Target:  5'- -uGUAGCgGCGCCGGGAuGGCCAugUUUc -3'
miRNA:   3'- gcCGUCG-CGCGGUUUU-CUGGUugAAG- -5'
28912 5' -52.9 NC_006146.1 + 90055 0.66 0.972037
Target:  5'- gGGguGCGUuaugcacguggGCCAu--GGCCGugUUCu -3'
miRNA:   3'- gCCguCGCG-----------CGGUuuuCUGGUugAAG- -5'
28912 5' -52.9 NC_006146.1 + 89425 0.69 0.896531
Target:  5'- aGGCcuGGUuggagGC-CCAAGAGGCUAACUUCg -3'
miRNA:   3'- gCCG--UCG-----CGcGGUUUUCUGGUUGAAG- -5'
28912 5' -52.9 NC_006146.1 + 86613 0.66 0.972037
Target:  5'- gGGCAGCuGgGCUuGAGGGgCAGCUg- -3'
miRNA:   3'- gCCGUCG-CgCGGuUUUCUgGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 86579 0.66 0.972037
Target:  5'- gGGCAGCuGgGCUuGAGGGgCAGCUg- -3'
miRNA:   3'- gCCGUCG-CgCGGuUUUCUgGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 86545 0.66 0.972037
Target:  5'- gGGCAGCuGgGCUuGAGGGgCAGCUg- -3'
miRNA:   3'- gCCGUCG-CgCGGuUUUCUgGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 86493 0.68 0.93725
Target:  5'- gGGCAGCuGgGCCuuGAGGGgCAGCUg- -3'
miRNA:   3'- gCCGUCG-CgCGGu-UUUCUgGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 79795 0.67 0.965917
Target:  5'- aGGCGGagcggGCGUCGAGuuGCCAugGCUUCc -3'
miRNA:   3'- gCCGUCg----CGCGGUUUucUGGU--UGAAG- -5'
28912 5' -52.9 NC_006146.1 + 77315 0.68 0.92355
Target:  5'- cCGGCGGguCGCGCaugcccaGGcugauggugaaggacGAGGCCGGCUUCg -3'
miRNA:   3'- -GCCGUC--GCGCGg------UU---------------UUCUGGUUGAAG- -5'
28912 5' -52.9 NC_006146.1 + 72196 0.67 0.962527
Target:  5'- -cGCGGCG-GCCGgaugggcgGGAGACCAGCg-- -3'
miRNA:   3'- gcCGUCGCgCGGU--------UUUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 71684 0.68 0.932181
Target:  5'- uGGUcgGGCGCGCCG--AGGCCGcgGCcUCc -3'
miRNA:   3'- gCCG--UCGCGCGGUuuUCUGGU--UGaAG- -5'
28912 5' -52.9 NC_006146.1 + 71015 0.69 0.90309
Target:  5'- gGGCAGagGCGCC---GGAUCAGCUg- -3'
miRNA:   3'- gCCGUCg-CGCGGuuuUCUGGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 66576 0.67 0.950972
Target:  5'- aGGCGGCGCaggcagGCCGuGAGACCcAUa-- -3'
miRNA:   3'- gCCGUCGCG------CGGUuUUCUGGuUGaag -5'
28912 5' -52.9 NC_006146.1 + 65075 0.66 0.97478
Target:  5'- uCGGCGGCGCgggGCagGAGGGGCCcuaUUCu -3'
miRNA:   3'- -GCCGUCGCG---CGg-UUUUCUGGuugAAG- -5'
28912 5' -52.9 NC_006146.1 + 65068 0.66 0.979671
Target:  5'- uGGCAGCGCcuccggaugucgGCC-GGGGACCccuggGugUUCu -3'
miRNA:   3'- gCCGUCGCG------------CGGuUUUCUGG-----UugAAG- -5'
28912 5' -52.9 NC_006146.1 + 64429 0.72 0.752989
Target:  5'- aCGGCGGCGUacgcuGCCAGGAGACagaggGGCUg- -3'
miRNA:   3'- -GCCGUCGCG-----CGGUUUUCUGg----UUGAag -5'
28912 5' -52.9 NC_006146.1 + 60462 0.71 0.82203
Target:  5'- gCGGCAGgcCGCggggagcggugagagGCCGGGGGGCCAGCUc- -3'
miRNA:   3'- -GCCGUC--GCG---------------CGGUUUUCUGGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 58209 0.66 0.979671
Target:  5'- -uGCuGCGgGCCAGacccgagaucGAGACCGACa-- -3'
miRNA:   3'- gcCGuCGCgCGGUU----------UUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 58121 0.66 0.975044
Target:  5'- aGGCaggagAGCGUGCCucAuuuuuacaugcgccuGGCCGGCUUCu -3'
miRNA:   3'- gCCG-----UCGCGCGGuuUu--------------CUGGUUGAAG- -5'
28912 5' -52.9 NC_006146.1 + 57374 0.7 0.852271
Target:  5'- gCGGCGGUgGCGCCGGuGGGCUGGCc-- -3'
miRNA:   3'- -GCCGUCG-CGCGGUUuUCUGGUUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.