Results 101 - 120 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28912 | 5' | -52.9 | NC_006146.1 | + | 57299 | 0.66 | 0.977323 |
Target: 5'- gGGCAG-GCGaCgGAGAGACUGGCg-- -3' miRNA: 3'- gCCGUCgCGC-GgUUUUCUGGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 57092 | 0.7 | 0.860206 |
Target: 5'- aCGaGCGGCGCGUCcu--GGCCAGCg-- -3' miRNA: 3'- -GC-CGUCGCGCGGuuuuCUGGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 56490 | 0.66 | 0.979671 |
Target: 5'- gCGGCaucAGCGCGCgCAGucGGGCC-GCggggUCg -3' miRNA: 3'- -GCCG---UCGCGCG-GUUu-UCUGGuUGa---AG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 56130 | 0.67 | 0.95891 |
Target: 5'- uGGCcGCGgGCCccGAGACCGAg--- -3' miRNA: 3'- gCCGuCGCgCGGuuUUCUGGUUgaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 55763 | 0.76 | 0.56629 |
Target: 5'- cCGGCGGCGgGCCAGgggcagcGAGGCCAccacGCUg- -3' miRNA: 3'- -GCCGUCGCgCGGUU-------UUCUGGU----UGAag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 55672 | 0.67 | 0.95891 |
Target: 5'- aGGCGGCGUu---GAAGGCCAGCa-- -3' miRNA: 3'- gCCGUCGCGcgguUUUCUGGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 54790 | 0.67 | 0.962527 |
Target: 5'- aGGgAGCGCGCCuu--GGgCAGCUc- -3' miRNA: 3'- gCCgUCGCGCGGuuuuCUgGUUGAag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 53741 | 0.67 | 0.962527 |
Target: 5'- -cGCGGCuGCGCCGgggcGAAGACgGGCggCg -3' miRNA: 3'- gcCGUCG-CGCGGU----UUUCUGgUUGaaG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 53523 | 0.73 | 0.701623 |
Target: 5'- gGGCcGCGCGUguGAAGGCCGcgaggaccgagggGCUUCu -3' miRNA: 3'- gCCGuCGCGCGguUUUCUGGU-------------UGAAG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 53209 | 0.73 | 0.743105 |
Target: 5'- gGGCGGCGUGCCAAAcuccgcGGGCCuucccucuCUUUc -3' miRNA: 3'- gCCGUCGCGCGGUUU------UCUGGuu------GAAG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 53167 | 0.75 | 0.608893 |
Target: 5'- gCGGCGGUG-GCCGGAAGGCuCGGCcUCg -3' miRNA: 3'- -GCCGUCGCgCGGUUUUCUG-GUUGaAG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 52987 | 0.68 | 0.93725 |
Target: 5'- gGGCGG-GCGUCucGAGGCCccuCUUCu -3' miRNA: 3'- gCCGUCgCGCGGuuUUCUGGuu-GAAG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 52977 | 0.66 | 0.97478 |
Target: 5'- cCGGUAGUGCGCaggcGGACCuGCc-- -3' miRNA: 3'- -GCCGUCGCGCGguuuUCUGGuUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 52023 | 0.66 | 0.977077 |
Target: 5'- aGGCAGUccGCgGCgGAGGGGCUguuucauAGCUUCg -3' miRNA: 3'- gCCGUCG--CG-CGgUUUUCUGG-------UUGAAG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 51947 | 0.68 | 0.926862 |
Target: 5'- gCGGUcuGCGCGCCAAcuGGcGCCGACg-- -3' miRNA: 3'- -GCCGu-CGCGCGGUUu-UC-UGGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 51738 | 0.67 | 0.95891 |
Target: 5'- aGGCGGCGC-CCcGAGG-UgGGCUUCu -3' miRNA: 3'- gCCGUCGCGcGGuUUUCuGgUUGAAG- -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 51578 | 0.74 | 0.650751 |
Target: 5'- aGGCGGCGCgGCCGAAGGGggGACUg- -3' miRNA: 3'- gCCGUCGCG-CGGUUUUCUggUUGAag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 50970 | 0.72 | 0.772414 |
Target: 5'- cCGGCAGCaGCGCCGcu--GCCAACa-- -3' miRNA: 3'- -GCCGUCG-CGCGGUuuucUGGUUGaag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 49746 | 0.67 | 0.950972 |
Target: 5'- gGGCGGUGC-CCAGGuAGAgCAGCUc- -3' miRNA: 3'- gCCGUCGCGcGGUUU-UCUgGUUGAag -5' |
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28912 | 5' | -52.9 | NC_006146.1 | + | 49501 | 0.69 | 0.889731 |
Target: 5'- gGGCGGCGUGgCAucuGGAUCGGCg-- -3' miRNA: 3'- gCCGUCGCGCgGUuu-UCUGGUUGaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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