miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28912 5' -52.9 NC_006146.1 + 119811 0.77 0.513471
Target:  5'- cCGGCAGCGCaaggcgggggaccgGCCAGAGGACCugGAgaUCa -3'
miRNA:   3'- -GCCGUCGCG--------------CGGUUUUCUGG--UUgaAG- -5'
28912 5' -52.9 NC_006146.1 + 147367 0.71 0.827243
Target:  5'- uCGGCGGC-CGCCAGAcacgGGAgucCCGAgUUCa -3'
miRNA:   3'- -GCCGUCGcGCGGUUU----UCU---GGUUgAAG- -5'
28912 5' -52.9 NC_006146.1 + 127069 0.71 0.844127
Target:  5'- uGGCGGCGCgggaaGCCGAAAgGGCCAggGCg-- -3'
miRNA:   3'- gCCGUCGCG-----CGGUUUU-CUGGU--UGaag -5'
28912 5' -52.9 NC_006146.1 + 143558 0.66 0.980339
Target:  5'- cCGGCcuuGcCGCGCCAcccgcuguuuuugGAGGGCCAGuugaagcaggcauguCUUCa -3'
miRNA:   3'- -GCCGu--C-GCGCGGU-------------UUUCUGGUU---------------GAAG- -5'
28912 5' -52.9 NC_006146.1 + 51578 0.74 0.650751
Target:  5'- aGGCGGCGCgGCCGAAGGGggGACUg- -3'
miRNA:   3'- gCCGUCGCG-CGGUUUUCUggUUGAag -5'
28912 5' -52.9 NC_006146.1 + 99160 0.74 0.650751
Target:  5'- cCGGCAG-GUGgCGGAGGGCCAGCUc- -3'
miRNA:   3'- -GCCGUCgCGCgGUUUUCUGGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 53523 0.73 0.701623
Target:  5'- gGGCcGCGCGUguGAAGGCCGcgaggaccgagggGCUUCu -3'
miRNA:   3'- gCCGuCGCGCGguUUUCUGGU-------------UGAAG- -5'
28912 5' -52.9 NC_006146.1 + 2849 0.73 0.70265
Target:  5'- gGaGCGGgGUGCCGGuuguGGCCGGCUUCu -3'
miRNA:   3'- gC-CGUCgCGCGGUUuu--CUGGUUGAAG- -5'
28912 5' -52.9 NC_006146.1 + 170443 0.73 0.70265
Target:  5'- cCGGC-GCGUGCCGGGGGACCcgggGGCgugUCc -3'
miRNA:   3'- -GCCGuCGCGCGGUUUUCUGG----UUGa--AG- -5'
28912 5' -52.9 NC_006146.1 + 21948 0.71 0.809616
Target:  5'- aGGCc-CGCGCCAuuGGGGCCAGCa-- -3'
miRNA:   3'- gCCGucGCGCGGUu-UUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 53209 0.73 0.743105
Target:  5'- gGGCGGCGUGCCAAAcuccgcGGGCCuucccucuCUUUc -3'
miRNA:   3'- gCCGUCGCGCGGUUU------UCUGGuu------GAAG- -5'
28912 5' -52.9 NC_006146.1 + 169512 0.73 0.70265
Target:  5'- cCGGC-GCGUGCCGGGGGACCcgggGGCgugUCc -3'
miRNA:   3'- -GCCGuCGCGCGGUUUUCUGG----UUGa--AG- -5'
28912 5' -52.9 NC_006146.1 + 55763 0.76 0.56629
Target:  5'- cCGGCGGCGgGCCAGgggcagcGAGGCCAccacGCUg- -3'
miRNA:   3'- -GCCGUCGCgCGGUU-------UUCUGGU----UGAag -5'
28912 5' -52.9 NC_006146.1 + 64429 0.72 0.752989
Target:  5'- aCGGCGGCGUacgcuGCCAGGAGACagaggGGCUg- -3'
miRNA:   3'- -GCCGUCGCG-----CGGUUUUCUGg----UUGAag -5'
28912 5' -52.9 NC_006146.1 + 53167 0.75 0.608893
Target:  5'- gCGGCGGUG-GCCGGAAGGCuCGGCcUCg -3'
miRNA:   3'- -GCCGUCGCgCGGUUUUCUG-GUUGaAG- -5'
28912 5' -52.9 NC_006146.1 + 168580 0.73 0.70265
Target:  5'- cCGGC-GCGUGCCGGGGGACCcgggGGCgugUCc -3'
miRNA:   3'- -GCCGuCGCGCGGUUUUCUGG----UUGa--AG- -5'
28912 5' -52.9 NC_006146.1 + 99222 0.72 0.800545
Target:  5'- gCGGCcucGGCGCGCCc---GACCAccgucucggGCUUCu -3'
miRNA:   3'- -GCCG---UCGCGCGGuuuuCUGGU---------UGAAG- -5'
28912 5' -52.9 NC_006146.1 + 129336 0.71 0.835782
Target:  5'- uCGcGCAGCGCGCgGAgcGGCCGG-UUCu -3'
miRNA:   3'- -GC-CGUCGCGCGgUUuuCUGGUUgAAG- -5'
28912 5' -52.9 NC_006146.1 + 149662 0.75 0.619351
Target:  5'- cCGGCAGCGCGCCugcacGAAcuugcAGGCCGuUUUCc -3'
miRNA:   3'- -GCCGUCGCGCGG-----UUU-----UCUGGUuGAAG- -5'
28912 5' -52.9 NC_006146.1 + 161254 0.74 0.668497
Target:  5'- aCGGCAGCuaccugugccgcauGCGCCuggGGGAGACCGAggUCa -3'
miRNA:   3'- -GCCGUCG--------------CGCGG---UUUUCUGGUUgaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.