miRNA display CGI


Results 41 - 60 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28912 5' -52.9 NC_006146.1 + 130534 0.69 0.915473
Target:  5'- gGGCGGCGa-CCAGGGGGCCuuCUcCg -3'
miRNA:   3'- gCCGUCGCgcGGUUUUCUGGuuGAaG- -5'
28912 5' -52.9 NC_006146.1 + 147367 0.71 0.827243
Target:  5'- uCGGCGGC-CGCCAGAcacgGGAgucCCGAgUUCa -3'
miRNA:   3'- -GCCGUCGcGCGGUUU----UCU---GGUUgAAG- -5'
28912 5' -52.9 NC_006146.1 + 53167 0.75 0.608893
Target:  5'- gCGGCGGUG-GCCGGAAGGCuCGGCcUCg -3'
miRNA:   3'- -GCCGUCGCgCGGUUUUCUG-GUUGaAG- -5'
28912 5' -52.9 NC_006146.1 + 147169 0.69 0.90309
Target:  5'- cCGGCGGCgGCGC----AGACCGGCg-- -3'
miRNA:   3'- -GCCGUCG-CGCGguuuUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 55763 0.76 0.56629
Target:  5'- cCGGCGGCGgGCCAGgggcagcGAGGCCAccacGCUg- -3'
miRNA:   3'- -GCCGUCGCgCGGUU-------UUCUGGU----UGAag -5'
28912 5' -52.9 NC_006146.1 + 48341 0.67 0.95506
Target:  5'- gGGCcaGGCGUccagucugGCCAGcGGGCCGGCcUCg -3'
miRNA:   3'- gCCG--UCGCG--------CGGUUuUCUGGUUGaAG- -5'
28912 5' -52.9 NC_006146.1 + 51578 0.74 0.650751
Target:  5'- aGGCGGCGCgGCCGAAGGGggGACUg- -3'
miRNA:   3'- gCCGUCGCG-CGGUUUUCUggUUGAag -5'
28912 5' -52.9 NC_006146.1 + 66576 0.67 0.950972
Target:  5'- aGGCGGCGCaggcagGCCGuGAGACCcAUa-- -3'
miRNA:   3'- gCCGUCGCG------CGGUuUUCUGGuUGaag -5'
28912 5' -52.9 NC_006146.1 + 25082 0.68 0.946644
Target:  5'- cCGGCGG-GCGCCAccAGGucCCAACa-- -3'
miRNA:   3'- -GCCGUCgCGCGGUuuUCU--GGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 47608 0.68 0.946644
Target:  5'- uCGGCGGC-CGCCAGggaucgccgauAGGGCCAcgaGCcgUCu -3'
miRNA:   3'- -GCCGUCGcGCGGUU-----------UUCUGGU---UGa-AG- -5'
28912 5' -52.9 NC_006146.1 + 147311 0.68 0.94207
Target:  5'- uGGgAGCGUGCaccuGGAAGACgCAGCUg- -3'
miRNA:   3'- gCCgUCGCGCGg---UUUUCUG-GUUGAag -5'
28912 5' -52.9 NC_006146.1 + 43278 0.68 0.921292
Target:  5'- aGGCAGCGgGCCGGcGGugCcGCc-- -3'
miRNA:   3'- gCCGUCGCgCGGUUuUCugGuUGaag -5'
28912 5' -52.9 NC_006146.1 + 168208 0.69 0.915473
Target:  5'- gGGCcGCGCGUgGGGAuGGCCGGCg-- -3'
miRNA:   3'- gCCGuCGCGCGgUUUU-CUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 89425 0.69 0.896531
Target:  5'- aGGCcuGGUuggagGC-CCAAGAGGCUAACUUCg -3'
miRNA:   3'- gCCG--UCG-----CGcGGUUUUCUGGUUGAAG- -5'
28912 5' -52.9 NC_006146.1 + 27124 0.7 0.875423
Target:  5'- uGGCAGCaucagaGCGCCAGAAGcCCAc---- -3'
miRNA:   3'- gCCGUCG------CGCGGUUUUCuGGUugaag -5'
28912 5' -52.9 NC_006146.1 + 14813 0.7 0.875423
Target:  5'- uGGCAGCaucagaGCGCCAGAAGcCCAc---- -3'
miRNA:   3'- gCCGUCG------CGCGGUUUUCuGGUugaag -5'
28912 5' -52.9 NC_006146.1 + 127069 0.71 0.844127
Target:  5'- uGGCGGCGCgggaaGCCGAAAgGGCCAggGCg-- -3'
miRNA:   3'- gCCGUCGCG-----CGGUUUU-CUGGU--UGaag -5'
28912 5' -52.9 NC_006146.1 + 64429 0.72 0.752989
Target:  5'- aCGGCGGCGUacgcuGCCAGGAGACagaggGGCUg- -3'
miRNA:   3'- -GCCGUCGCG-----CGGUUUUCUGg----UUGAag -5'
28912 5' -52.9 NC_006146.1 + 170443 0.73 0.70265
Target:  5'- cCGGC-GCGUGCCGGGGGACCcgggGGCgugUCc -3'
miRNA:   3'- -GCCGuCGCGCGGUUUUCUGG----UUGa--AG- -5'
28912 5' -52.9 NC_006146.1 + 53523 0.73 0.701623
Target:  5'- gGGCcGCGCGUguGAAGGCCGcgaggaccgagggGCUUCu -3'
miRNA:   3'- gCCGuCGCGCGguUUUCUGGU-------------UGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.