miRNA display CGI


Results 61 - 80 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28912 5' -52.9 NC_006146.1 + 168208 0.69 0.915473
Target:  5'- gGGCcGCGCGUgGGGAuGGCCGGCg-- -3'
miRNA:   3'- gCCGuCGCGCGgUUUU-CUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 52987 0.68 0.93725
Target:  5'- gGGCGG-GCGUCucGAGGCCccuCUUCu -3'
miRNA:   3'- gCCGUCgCGCGGuuUUCUGGuu-GAAG- -5'
28912 5' -52.9 NC_006146.1 + 99160 0.74 0.650751
Target:  5'- cCGGCAG-GUGgCGGAGGGCCAGCUc- -3'
miRNA:   3'- -GCCGUCgCGCgGUUUUCUGGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 2849 0.73 0.70265
Target:  5'- gGaGCGGgGUGCCGGuuguGGCCGGCUUCu -3'
miRNA:   3'- gC-CGUCgCGCGGUUuu--CUGGUUGAAG- -5'
28912 5' -52.9 NC_006146.1 + 46454 0.73 0.743105
Target:  5'- gCGGCGGCGUagGCCGGAugcgugccGACCAGCa-- -3'
miRNA:   3'- -GCCGUCGCG--CGGUUUu-------CUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 99222 0.72 0.800545
Target:  5'- gCGGCcucGGCGCGCCc---GACCAccgucucggGCUUCu -3'
miRNA:   3'- -GCCG---UCGCGCGGuuuuCUGGU---------UGAAG- -5'
28912 5' -52.9 NC_006146.1 + 57374 0.7 0.852271
Target:  5'- gCGGCGGUgGCGCCGGuGGGCUGGCc-- -3'
miRNA:   3'- -GCCGUCG-CGCGGUUuUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 17891 0.7 0.875423
Target:  5'- uGGCAGCaucagaGCGCCAGAAGcCCAc---- -3'
miRNA:   3'- gCCGUCG------CGCGGUUUUCuGGUugaag -5'
28912 5' -52.9 NC_006146.1 + 92449 0.7 0.882693
Target:  5'- -uGUAGCgGCGCCGGGAuGGCCAugUUUc -3'
miRNA:   3'- gcCGUCG-CGCGGUUUU-CUGGUugAAG- -5'
28912 5' -52.9 NC_006146.1 + 125732 0.69 0.896531
Target:  5'- aGGcCAG-GUGCuCAAAGGACCAGCg-- -3'
miRNA:   3'- gCC-GUCgCGCG-GUUUUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 44027 0.66 0.972037
Target:  5'- aGGgGGCG-GCCGAGGGcCCcGCUUUu -3'
miRNA:   3'- gCCgUCGCgCGGUUUUCuGGuUGAAG- -5'
28912 5' -52.9 NC_006146.1 + 98446 0.67 0.965917
Target:  5'- cCGGUuucGGCGcCGCCcGGGGGCCAGucUCu -3'
miRNA:   3'- -GCCG---UCGC-GCGGuUUUCUGGUUgaAG- -5'
28912 5' -52.9 NC_006146.1 + 10989 0.68 0.946644
Target:  5'- aGGCGGCGCuGCCGGu-GACgGggguCUUCu -3'
miRNA:   3'- gCCGUCGCG-CGGUUuuCUGgUu---GAAG- -5'
28912 5' -52.9 NC_006146.1 + 15849 0.68 0.946644
Target:  5'- cCGGCGG-GCGCCAccAGGucCCAACa-- -3'
miRNA:   3'- -GCCGUCgCGCGGUuuUCU--GGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 66576 0.67 0.950972
Target:  5'- aGGCGGCGCaggcagGCCGuGAGACCcAUa-- -3'
miRNA:   3'- gCCGUCGCG------CGGUuUUCUGGuUGaag -5'
28912 5' -52.9 NC_006146.1 + 48341 0.67 0.95506
Target:  5'- gGGCcaGGCGUccagucugGCCAGcGGGCCGGCcUCg -3'
miRNA:   3'- gCCG--UCGCG--------CGGUUuUCUGGUUGaAG- -5'
28912 5' -52.9 NC_006146.1 + 45589 0.67 0.95891
Target:  5'- aGGCGGCcUGCCucgcGAAGACgGACaUCu -3'
miRNA:   3'- gCCGUCGcGCGGu---UUUCUGgUUGaAG- -5'
28912 5' -52.9 NC_006146.1 + 56130 0.67 0.95891
Target:  5'- uGGCcGCGgGCCccGAGACCGAg--- -3'
miRNA:   3'- gCCGuCGCgCGGuuUUCUGGUUgaag -5'
28912 5' -52.9 NC_006146.1 + 118240 0.67 0.962527
Target:  5'- aGGCGGCuGCGCaCGuacugggggccAGAGcCCAugUUCu -3'
miRNA:   3'- gCCGUCG-CGCG-GU-----------UUUCuGGUugAAG- -5'
28912 5' -52.9 NC_006146.1 + 43320 0.67 0.962527
Target:  5'- cCGGcCGGCGCgGCCucggccgcccAGGGCCAGCa-- -3'
miRNA:   3'- -GCC-GUCGCG-CGGuu--------UUCUGGUUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.