miRNA display CGI


Results 81 - 100 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28912 5' -52.9 NC_006146.1 + 28160 0.68 0.946644
Target:  5'- cCGGCGG-GCGCCAccAGGucCCAACa-- -3'
miRNA:   3'- -GCCGUCgCGCGGUuuUCU--GGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 48341 0.67 0.95506
Target:  5'- gGGCcaGGCGUccagucugGCCAGcGGGCCGGCcUCg -3'
miRNA:   3'- gCCG--UCGCG--------CGGUUuUCUGGUUGaAG- -5'
28912 5' -52.9 NC_006146.1 + 130224 0.67 0.95891
Target:  5'- aGGaCAGCGCGCCucAGAGcCCAccACcagUCu -3'
miRNA:   3'- gCC-GUCGCGCGGu-UUUCuGGU--UGa--AG- -5'
28912 5' -52.9 NC_006146.1 + 56130 0.67 0.95891
Target:  5'- uGGCcGCGgGCCccGAGACCGAg--- -3'
miRNA:   3'- gCCGuCGCgCGGuuUUCUGGUUgaag -5'
28912 5' -52.9 NC_006146.1 + 54790 0.67 0.962527
Target:  5'- aGGgAGCGCGCCuu--GGgCAGCUc- -3'
miRNA:   3'- gCCgUCGCGCGGuuuuCUgGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 79795 0.67 0.965917
Target:  5'- aGGCGGagcggGCGUCGAGuuGCCAugGCUUCc -3'
miRNA:   3'- gCCGUCg----CGCGGUUUucUGGU--UGAAG- -5'
28912 5' -52.9 NC_006146.1 + 98446 0.67 0.965917
Target:  5'- cCGGUuucGGCGcCGCCcGGGGGCCAGucUCu -3'
miRNA:   3'- -GCCG---UCGC-GCGGuUUUCUGGUUgaAG- -5'
28912 5' -52.9 NC_006146.1 + 53209 0.73 0.743105
Target:  5'- gGGCGGCGUGCCAAAcuccgcGGGCCuucccucuCUUUc -3'
miRNA:   3'- gCCGUCGCGCGGUUU------UCUGGuu------GAAG- -5'
28912 5' -52.9 NC_006146.1 + 169512 0.73 0.70265
Target:  5'- cCGGC-GCGUGCCGGGGGACCcgggGGCgugUCc -3'
miRNA:   3'- -GCCGuCGCGCGGUUUUCUGG----UUGa--AG- -5'
28912 5' -52.9 NC_006146.1 + 65068 0.66 0.979671
Target:  5'- uGGCAGCGCcuccggaugucgGCC-GGGGACCccuggGugUUCu -3'
miRNA:   3'- gCCGUCGCG------------CGGuUUUCUGG-----UugAAG- -5'
28912 5' -52.9 NC_006146.1 + 147367 0.71 0.827243
Target:  5'- uCGGCGGC-CGCCAGAcacgGGAgucCCGAgUUCa -3'
miRNA:   3'- -GCCGUCGcGCGGUUU----UCU---GGUUgAAG- -5'
28912 5' -52.9 NC_006146.1 + 57374 0.7 0.852271
Target:  5'- gCGGCGGUgGCGCCGGuGGGCUGGCc-- -3'
miRNA:   3'- -GCCGUCG-CGCGGUUuUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 24046 0.7 0.875423
Target:  5'- uGGCAGCaucagaGCGCCAGAAGcCCAc---- -3'
miRNA:   3'- gCCGUCG------CGCGGUUUUCuGGUugaag -5'
28912 5' -52.9 NC_006146.1 + 49501 0.69 0.889731
Target:  5'- gGGCGGCGUGgCAucuGGAUCGGCg-- -3'
miRNA:   3'- gCCGUCGCGCgGUuu-UCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 46978 0.66 0.974515
Target:  5'- cCGGCcGC-CGCCAGGaauugcgcccgucGGACCGGCa-- -3'
miRNA:   3'- -GCCGuCGcGCGGUUU-------------UCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 147169 0.69 0.90309
Target:  5'- cCGGCGGCgGCGC----AGACCGGCg-- -3'
miRNA:   3'- -GCCGUCG-CGCGguuuUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 58209 0.66 0.979671
Target:  5'- -uGCuGCGgGCCAGacccgagaucGAGACCGACa-- -3'
miRNA:   3'- gcCGuCGCgCGGUU----------UUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 35582 0.66 0.971174
Target:  5'- cCGGCAGCGgcccggccacccccCGCCGGAgcGGGgCAGCg-- -3'
miRNA:   3'- -GCCGUCGC--------------GCGGUUU--UCUgGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 136702 0.67 0.95778
Target:  5'- gGGCGGCGCgaggucccugccugGCCcAGGGuCCGGCUg- -3'
miRNA:   3'- gCCGUCGCG--------------CGGuUUUCuGGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 23782 0.67 0.962527
Target:  5'- gCGGCcuGCGCGUCu-GGGGCCcGCUg- -3'
miRNA:   3'- -GCCGu-CGCGCGGuuUUCUGGuUGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.