miRNA display CGI


Results 21 - 40 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28912 5' -52.9 NC_006146.1 + 1863 0.66 0.972037
Target:  5'- gGGC-GCGCGCCGgccucccgucccGAAGGCCcuGGCa-- -3'
miRNA:   3'- gCCGuCGCGCGGU------------UUUCUGG--UUGaag -5'
28912 5' -52.9 NC_006146.1 + 2795 0.66 0.972037
Target:  5'- gGGC-GCGCGCCGgccucccgucccGAAGGCCcuGGCa-- -3'
miRNA:   3'- gCCGuCGCGCGGU------------UUUCUGG--UUGaag -5'
28912 5' -52.9 NC_006146.1 + 57299 0.66 0.977323
Target:  5'- gGGCAG-GCGaCgGAGAGACUGGCg-- -3'
miRNA:   3'- gCCGUCgCGC-GgUUUUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 15147 0.66 0.979444
Target:  5'- gGGUcuacagcuccucgGGCGaCGCCGuggaagcgcuGAAGGCCGACUg- -3'
miRNA:   3'- gCCG-------------UCGC-GCGGU----------UUUCUGGUUGAag -5'
28912 5' -52.9 NC_006146.1 + 167012 0.66 0.979671
Target:  5'- gGGCcucgucGGUGgGCCucgccGAGACCAgcaGCUUCu -3'
miRNA:   3'- gCCG------UCGCgCGGuu---UUCUGGU---UGAAG- -5'
28912 5' -52.9 NC_006146.1 + 142456 0.66 0.979671
Target:  5'- gGGCGGC-CGCCuuGGGGCCcggagUCu -3'
miRNA:   3'- gCCGUCGcGCGGuuUUCUGGuuga-AG- -5'
28912 5' -52.9 NC_006146.1 + 145534 0.66 0.979671
Target:  5'- gGGCGGC-CGCCuuGGGGCCcggagUCu -3'
miRNA:   3'- gCCGUCGcGCGGuuUUCUGGuuga-AG- -5'
28912 5' -52.9 NC_006146.1 + 148612 0.66 0.979671
Target:  5'- gGGCGGC-CGCCuuGGGGCCcggagUCu -3'
miRNA:   3'- gCCGUCGcGCGGuuUUCUGGuuga-AG- -5'
28912 5' -52.9 NC_006146.1 + 154767 0.66 0.979671
Target:  5'- gGGCGGC-CGCCuuGGGGCCcggagUCu -3'
miRNA:   3'- gCCGUCGcGCGGuuUUCUGGuuga-AG- -5'
28912 5' -52.9 NC_006146.1 + 157845 0.66 0.979671
Target:  5'- gGGCGGC-CGCCuuGGGGCCcggagUCu -3'
miRNA:   3'- gCCGUCGcGCGGuuUUCUGGuuga-AG- -5'
28912 5' -52.9 NC_006146.1 + 19137 0.66 0.977323
Target:  5'- gGGCAgGCGCaagGCUGAcGGGGCCAGCg-- -3'
miRNA:   3'- gCCGU-CGCG---CGGUU-UUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 52023 0.66 0.977077
Target:  5'- aGGCAGUccGCgGCgGAGGGGCUguuucauAGCUUCg -3'
miRNA:   3'- gCCGUCG--CG-CGgUUUUCUGG-------UUGAAG- -5'
28912 5' -52.9 NC_006146.1 + 3727 0.66 0.972037
Target:  5'- gGGC-GCGCGCCGgccucccgucccGAAGGCCcuGGCa-- -3'
miRNA:   3'- gCCGuCGCGCGGU------------UUUCUGG--UUGaag -5'
28912 5' -52.9 NC_006146.1 + 112004 0.66 0.972037
Target:  5'- -uGCAGguCGCGCCAAAagugggcguugcAGGCCucCUUCa -3'
miRNA:   3'- gcCGUC--GCGCGGUUU------------UCUGGuuGAAG- -5'
28912 5' -52.9 NC_006146.1 + 13057 0.66 0.97478
Target:  5'- aGGCGGCGCucgguGCCcGuccccuccGGGGCCAGCg-- -3'
miRNA:   3'- gCCGUCGCG-----CGGuU--------UUCUGGUUGaag -5'
28912 5' -52.9 NC_006146.1 + 28247 0.66 0.97478
Target:  5'- uGGCuGCGauaGCCGAGcacGCCAuggGCUUCg -3'
miRNA:   3'- gCCGuCGCg--CGGUUUuc-UGGU---UGAAG- -5'
28912 5' -52.9 NC_006146.1 + 65075 0.66 0.97478
Target:  5'- uCGGCGGCGCgggGCagGAGGGGCCcuaUUCu -3'
miRNA:   3'- -GCCGUCGCG---CGg-UUUUCUGGuugAAG- -5'
28912 5' -52.9 NC_006146.1 + 104852 0.66 0.97478
Target:  5'- gGGCAggaacuuuGCGUGCCuGAggcauaaccacaGGACCAGCUcCa -3'
miRNA:   3'- gCCGU--------CGCGCGGuUU------------UCUGGUUGAaG- -5'
28912 5' -52.9 NC_006146.1 + 52977 0.66 0.97478
Target:  5'- cCGGUAGUGCGCaggcGGACCuGCc-- -3'
miRNA:   3'- -GCCGUCGCGCGguuuUCUGGuUGaag -5'
28912 5' -52.9 NC_006146.1 + 161754 0.66 0.976581
Target:  5'- uGGCGGCugagguccgaggggGCGCCugggcGGGGGCCugaauCUUCg -3'
miRNA:   3'- gCCGUCG--------------CGCGGu----UUUCUGGuu---GAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.