miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28913 3' -50.9 NC_006146.1 + 125816 0.66 0.996758
Target:  5'- -aUGGCCGgcaccCUCCCUCUccccACGAGGc -3'
miRNA:   3'- cgACUGGCa----GAGGGAGAugu-UGUUCU- -5'
28913 3' -50.9 NC_006146.1 + 44228 0.66 0.996191
Target:  5'- uGgUGACCGUCUC-CUCUggccggGCGGCGGu- -3'
miRNA:   3'- -CgACUGGCAGAGgGAGA------UGUUGUUcu -5'
28913 3' -50.9 NC_006146.1 + 49654 0.66 0.996191
Target:  5'- gGC-GACCGUCUCgaaCUCggGCAGgGGGGc -3'
miRNA:   3'- -CGaCUGGCAGAGg--GAGa-UGUUgUUCU- -5'
28913 3' -50.9 NC_006146.1 + 21640 0.66 0.995545
Target:  5'- cCUG-CC-UCUCCCUCUACAGucCcAGAg -3'
miRNA:   3'- cGACuGGcAGAGGGAGAUGUU--GuUCU- -5'
28913 3' -50.9 NC_006146.1 + 24718 0.66 0.995545
Target:  5'- cCUG-CC-UCUCCCUCUACAGucCcAGAg -3'
miRNA:   3'- cGACuGGcAGAGGGAGAUGUU--GuUCU- -5'
28913 3' -50.9 NC_006146.1 + 18562 0.66 0.995545
Target:  5'- cCUG-CC-UCUCCCUCUACAGucCcAGAg -3'
miRNA:   3'- cGACuGGcAGAGGGAGAUGUU--GuUCU- -5'
28913 3' -50.9 NC_006146.1 + 15484 0.66 0.995545
Target:  5'- cCUG-CC-UCUCCCUCUACAGucCcAGAg -3'
miRNA:   3'- cGACuGGcAGAGGGAGAUGUU--GuUCU- -5'
28913 3' -50.9 NC_006146.1 + 12405 0.66 0.995545
Target:  5'- cCUG-CC-UCUCCCUCUACAGucCcAGAg -3'
miRNA:   3'- cGACuGGcAGAGGGAGAUGUU--GuUCU- -5'
28913 3' -50.9 NC_006146.1 + 27796 0.66 0.995545
Target:  5'- cCUG-CC-UCUCCCUCUACAGucCcAGAg -3'
miRNA:   3'- cGACuGGcAGAGGGAGAUGUU--GuUCU- -5'
28913 3' -50.9 NC_006146.1 + 122627 0.66 0.995335
Target:  5'- aGgaGGCCGgggCCCUCUuucgcgccaggacgGCGGCGGGGg -3'
miRNA:   3'- -CgaCUGGCagaGGGAGA--------------UGUUGUUCU- -5'
28913 3' -50.9 NC_006146.1 + 21505 0.66 0.994813
Target:  5'- cCUGGCCGUCUaccagaaguUCgUCgagcGCAACGAGGa -3'
miRNA:   3'- cGACUGGCAGA---------GGgAGa---UGUUGUUCU- -5'
28913 3' -50.9 NC_006146.1 + 12576 0.66 0.994493
Target:  5'- uGCUGACCauccuccaggacaUCUCCCugcccaUCUGCAugugcuACGAGAa -3'
miRNA:   3'- -CGACUGGc------------AGAGGG------AGAUGU------UGUUCU- -5'
28913 3' -50.9 NC_006146.1 + 44242 0.67 0.992013
Target:  5'- -aUGGCCGUCUUaaaUUCUACAAUAu-- -3'
miRNA:   3'- cgACUGGCAGAGg--GAGAUGUUGUucu -5'
28913 3' -50.9 NC_006146.1 + 149214 0.67 0.990852
Target:  5'- uGUUGGCCG-C-CCC-CUGCAGCAGu- -3'
miRNA:   3'- -CGACUGGCaGaGGGaGAUGUUGUUcu -5'
28913 3' -50.9 NC_006146.1 + 69221 0.67 0.990852
Target:  5'- cGgaGACCGUcCUCUguCUCUugGACGAuGAc -3'
miRNA:   3'- -CgaCUGGCA-GAGG--GAGAugUUGUU-CU- -5'
28913 3' -50.9 NC_006146.1 + 4860 0.67 0.989561
Target:  5'- cGCUGGCCaUCUCgCCgu--UAACAGGAa -3'
miRNA:   3'- -CGACUGGcAGAG-GGagauGUUGUUCU- -5'
28913 3' -50.9 NC_006146.1 + 16890 0.67 0.989561
Target:  5'- aGCgGGCCGgCUCCUUCcACGuCAGGGa -3'
miRNA:   3'- -CGaCUGGCaGAGGGAGaUGUuGUUCU- -5'
28913 3' -50.9 NC_006146.1 + 67154 0.67 0.988132
Target:  5'- cGCUGGCCG-CUCCUgagCgcgGCGucCGGGAg -3'
miRNA:   3'- -CGACUGGCaGAGGGa--Ga--UGUu-GUUCU- -5'
28913 3' -50.9 NC_006146.1 + 66502 0.67 0.985882
Target:  5'- uGCUGACgGauuuuggcacggcCUCCCUCcacgaccGCAACAAGAu -3'
miRNA:   3'- -CGACUGgCa------------GAGGGAGa------UGUUGUUCU- -5'
28913 3' -50.9 NC_006146.1 + 117120 0.68 0.982927
Target:  5'- cGCgGGCCGaggCCCUCgucCGGCGAGAc -3'
miRNA:   3'- -CGaCUGGCagaGGGAGau-GUUGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.