miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28913 5' -61.9 NC_006146.1 + 102738 0.66 0.678214
Target:  5'- -aCgCUGCGCCUGCccGGGGaGGAgGc -3'
miRNA:   3'- aaGgGACGCGGACGcuUCCCgCCUgC- -5'
28913 5' -61.9 NC_006146.1 + 141943 0.66 0.652681
Target:  5'- -cCCCUGU-CC-GCGAGggagagucucuggccGGGCGGGCGg -3'
miRNA:   3'- aaGGGACGcGGaCGCUU---------------CCCGCCUGC- -5'
28913 5' -61.9 NC_006146.1 + 145021 0.66 0.652681
Target:  5'- -cCCCUGU-CC-GCGAGggagagucucuggccGGGCGGGCGg -3'
miRNA:   3'- aaGGGACGcGGaCGCUU---------------CCCGCCUGC- -5'
28913 5' -61.9 NC_006146.1 + 148099 0.66 0.652681
Target:  5'- -cCCCUGU-CC-GCGAGggagagucucuggccGGGCGGGCGg -3'
miRNA:   3'- aaGGGACGcGGaCGCUU---------------CCCGCCUGC- -5'
28913 5' -61.9 NC_006146.1 + 151177 0.66 0.652681
Target:  5'- -cCCCUGU-CC-GCGAGggagagucucuggccGGGCGGGCGg -3'
miRNA:   3'- aaGGGACGcGGaCGCUU---------------CCCGCCUGC- -5'
28913 5' -61.9 NC_006146.1 + 154255 0.66 0.652681
Target:  5'- -cCCCUGU-CC-GCGAGggagagucucuggccGGGCGGGCGg -3'
miRNA:   3'- aaGGGACGcGGaCGCUU---------------CCCGCCUGC- -5'
28913 5' -61.9 NC_006146.1 + 157333 0.66 0.652681
Target:  5'- -cCCCUGU-CC-GCGAGggagagucucuggccGGGCGGGCGg -3'
miRNA:   3'- aaGGGACGcGGaCGCUU---------------CCCGCCUGC- -5'
28913 5' -61.9 NC_006146.1 + 15573 0.66 0.64874
Target:  5'- gUCCCUgggaggacaggcGCGUCgGCGAGGGcGCGGcCu -3'
miRNA:   3'- aAGGGA------------CGCGGaCGCUUCC-CGCCuGc -5'
28913 5' -61.9 NC_006146.1 + 11839 0.66 0.64874
Target:  5'- -cCCUUGCGCCggGCccugcuucucgGGcuuGGGGCGGGCc -3'
miRNA:   3'- aaGGGACGCGGa-CG-----------CU---UCCCGCCUGc -5'
28913 5' -61.9 NC_006146.1 + 135109 0.66 0.638881
Target:  5'- uUUCCCaggguuuggguuUGCuCCgGCGggGGGUGGcCGg -3'
miRNA:   3'- -AAGGG------------ACGcGGaCGCuuCCCGCCuGC- -5'
28913 5' -61.9 NC_006146.1 + 18852 0.66 0.629017
Target:  5'- -cCCCggGCGCUgcCGggGuGGUGGACGu -3'
miRNA:   3'- aaGGGa-CGCGGacGCuuC-CCGCCUGC- -5'
28913 5' -61.9 NC_006146.1 + 100052 0.67 0.619156
Target:  5'- --aCCUGCGCCgggaaGAGGGGCuGGAa- -3'
miRNA:   3'- aagGGACGCGGacg--CUUCCCG-CCUgc -5'
28913 5' -61.9 NC_006146.1 + 129909 0.67 0.619156
Target:  5'- cUCUCUGCGCCcugggGCGccGGcGCGGcaccACGg -3'
miRNA:   3'- aAGGGACGCGGa----CGCuuCC-CGCC----UGC- -5'
28913 5' -61.9 NC_006146.1 + 3161 0.67 0.615213
Target:  5'- -cCCCUGCGCCcugaucgagcaccUGCGAucucugguucagaaAGGG-GGGCu -3'
miRNA:   3'- aaGGGACGCGG-------------ACGCU--------------UCCCgCCUGc -5'
28913 5' -61.9 NC_006146.1 + 66690 0.67 0.608318
Target:  5'- cUCCCUGaacccucgGCUUGCGGccccgugGGGGCGcaGACGg -3'
miRNA:   3'- aAGGGACg-------CGGACGCU-------UCCCGC--CUGC- -5'
28913 5' -61.9 NC_006146.1 + 44116 0.67 0.599466
Target:  5'- -cCCCgGCuGCCcgGCGAggAGGGgGGGCa -3'
miRNA:   3'- aaGGGaCG-CGGa-CGCU--UCCCgCCUGc -5'
28913 5' -61.9 NC_006146.1 + 115147 0.67 0.589651
Target:  5'- -cCCCUG-GCCcGcCGccGGGCGGugGa -3'
miRNA:   3'- aaGGGACgCGGaC-GCuuCCCGCCugC- -5'
28913 5' -61.9 NC_006146.1 + 55794 0.67 0.589651
Target:  5'- -aCgCUG-GCCaGCGAcucGGGGCGGugGa -3'
miRNA:   3'- aaGgGACgCGGaCGCU---UCCCGCCugC- -5'
28913 5' -61.9 NC_006146.1 + 167646 0.67 0.579865
Target:  5'- -gCCCgGCGCgUGCcGGGGGCccggGGGCGu -3'
miRNA:   3'- aaGGGaCGCGgACGcUUCCCG----CCUGC- -5'
28913 5' -61.9 NC_006146.1 + 168133 0.67 0.57401
Target:  5'- cUUCCCUGacauccgggcuuggGCCUGCGAGGGcCGGGu- -3'
miRNA:   3'- -AAGGGACg-------------CGGACGCUUCCcGCCUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.