miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28914 3' -48.4 NC_006146.1 + 45373 0.66 0.999381
Target:  5'- uUAUCAAG-CCCGCCUGUUccCUg-- -3'
miRNA:   3'- uGUAGUUCuGGGUGGACAAauGAguc -5'
28914 3' -48.4 NC_006146.1 + 61978 0.66 0.999381
Target:  5'- cCGUUGAGGCCCACgUcaccUGCUCGGu -3'
miRNA:   3'- uGUAGUUCUGGGUGgAcaa-AUGAGUC- -5'
28914 3' -48.4 NC_006146.1 + 68845 0.67 0.998846
Target:  5'- gGC-UCAAGGCCCugCUGgcaag-CAGg -3'
miRNA:   3'- -UGuAGUUCUGGGugGACaaaugaGUC- -5'
28914 3' -48.4 NC_006146.1 + 133156 0.67 0.998304
Target:  5'- cACAUCccgGAGACCUGCCUGaa-ACUCc- -3'
miRNA:   3'- -UGUAG---UUCUGGGUGGACaaaUGAGuc -5'
28914 3' -48.4 NC_006146.1 + 158193 0.67 0.997961
Target:  5'- cCGUCAGGACCCcCUUGUcaaugGC-CAGg -3'
miRNA:   3'- uGUAGUUCUGGGuGGACAaa---UGaGUC- -5'
28914 3' -48.4 NC_006146.1 + 39426 0.67 0.997961
Target:  5'- gGCAccCcAGACCCACCUGggUGCa--- -3'
miRNA:   3'- -UGUa-GuUCUGGGUGGACaaAUGaguc -5'
28914 3' -48.4 NC_006146.1 + 155359 0.67 0.997561
Target:  5'- gACG--AAGGCCCGCCUGUagaggaaguggUUGCgCAGg -3'
miRNA:   3'- -UGUagUUCUGGGUGGACA-----------AAUGaGUC- -5'
28914 3' -48.4 NC_006146.1 + 92440 0.68 0.997098
Target:  5'- gACAUCAAagguGGCCCGCCUGg--GgUCuGa -3'
miRNA:   3'- -UGUAGUU----CUGGGUGGACaaaUgAGuC- -5'
28914 3' -48.4 NC_006146.1 + 19270 0.69 0.992553
Target:  5'- gACcgCAAGACCC-CCUGccggguCUCGGu -3'
miRNA:   3'- -UGuaGUUCUGGGuGGACaaau--GAGUC- -5'
28914 3' -48.4 NC_006146.1 + 15082 0.7 0.987193
Target:  5'- gGC-UCcgcuGACUCACCUGUUUgACUCGGu -3'
miRNA:   3'- -UGuAGuu--CUGGGUGGACAAA-UGAGUC- -5'
28914 3' -48.4 NC_006146.1 + 54060 0.71 0.976799
Target:  5'- -gGUCAGGGCCCACCUGgccGC-CGc -3'
miRNA:   3'- ugUAGUUCUGGGUGGACaaaUGaGUc -5'
28914 3' -48.4 NC_006146.1 + 96480 0.71 0.974134
Target:  5'- gACAUCcuGGCCCACCUGgagcagaACUCc- -3'
miRNA:   3'- -UGUAGuuCUGGGUGGACaaa----UGAGuc -5'
28914 3' -48.4 NC_006146.1 + 63363 0.72 0.957425
Target:  5'- gGCA-CAGGGCCCuCCUGgg-GCUCAu -3'
miRNA:   3'- -UGUaGUUCUGGGuGGACaaaUGAGUc -5'
28914 3' -48.4 NC_006146.1 + 46686 0.73 0.944464
Target:  5'- gGCAUCGugAGuggacugaauacACCCACCUGccUGCUCAGc -3'
miRNA:   3'- -UGUAGU--UC------------UGGGUGGACaaAUGAGUC- -5'
28914 3' -48.4 NC_006146.1 + 100856 0.73 0.938627
Target:  5'- -gAUCAAGGCCCGCCggaagguCUCGGg -3'
miRNA:   3'- ugUAGUUCUGGGUGGacaaau-GAGUC- -5'
28914 3' -48.4 NC_006146.1 + 60323 0.74 0.917632
Target:  5'- -gGUCGAGACCCACCgcaaccgcugGUUUgcgGCUCAc -3'
miRNA:   3'- ugUAGUUCUGGGUGGa---------CAAA---UGAGUc -5'
28914 3' -48.4 NC_006146.1 + 121030 0.76 0.844661
Target:  5'- aGCG-CAAGACCCGCCUGgacaUACUgGGc -3'
miRNA:   3'- -UGUaGUUCUGGGUGGACaa--AUGAgUC- -5'
28914 3' -48.4 NC_006146.1 + 104368 0.77 0.770723
Target:  5'- gACAUCGGGGCCCcCCUGUUUGacagCGGc -3'
miRNA:   3'- -UGUAGUUCUGGGuGGACAAAUga--GUC- -5'
28914 3' -48.4 NC_006146.1 + 15626 1.1 0.014652
Target:  5'- uACAUCAAGACCCACCUGUUUACUCAGa -3'
miRNA:   3'- -UGUAGUUCUGGGUGGACAAAUGAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.