Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28914 | 3' | -48.4 | NC_006146.1 | + | 15626 | 1.1 | 0.014652 |
Target: 5'- uACAUCAAGACCCACCUGUUUACUCAGa -3' miRNA: 3'- -UGUAGUUCUGGGUGGACAAAUGAGUC- -5' |
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28914 | 3' | -48.4 | NC_006146.1 | + | 104368 | 0.77 | 0.770723 |
Target: 5'- gACAUCGGGGCCCcCCUGUUUGacagCGGc -3' miRNA: 3'- -UGUAGUUCUGGGuGGACAAAUga--GUC- -5' |
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28914 | 3' | -48.4 | NC_006146.1 | + | 121030 | 0.76 | 0.844661 |
Target: 5'- aGCG-CAAGACCCGCCUGgacaUACUgGGc -3' miRNA: 3'- -UGUaGUUCUGGGUGGACaa--AUGAgUC- -5' |
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28914 | 3' | -48.4 | NC_006146.1 | + | 60323 | 0.74 | 0.917632 |
Target: 5'- -gGUCGAGACCCACCgcaaccgcugGUUUgcgGCUCAc -3' miRNA: 3'- ugUAGUUCUGGGUGGa---------CAAA---UGAGUc -5' |
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28914 | 3' | -48.4 | NC_006146.1 | + | 100856 | 0.73 | 0.938627 |
Target: 5'- -gAUCAAGGCCCGCCggaagguCUCGGg -3' miRNA: 3'- ugUAGUUCUGGGUGGacaaau-GAGUC- -5' |
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28914 | 3' | -48.4 | NC_006146.1 | + | 46686 | 0.73 | 0.944464 |
Target: 5'- gGCAUCGugAGuggacugaauacACCCACCUGccUGCUCAGc -3' miRNA: 3'- -UGUAGU--UC------------UGGGUGGACaaAUGAGUC- -5' |
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28914 | 3' | -48.4 | NC_006146.1 | + | 63363 | 0.72 | 0.957425 |
Target: 5'- gGCA-CAGGGCCCuCCUGgg-GCUCAu -3' miRNA: 3'- -UGUaGUUCUGGGuGGACaaaUGAGUc -5' |
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28914 | 3' | -48.4 | NC_006146.1 | + | 96480 | 0.71 | 0.974134 |
Target: 5'- gACAUCcuGGCCCACCUGgagcagaACUCc- -3' miRNA: 3'- -UGUAGuuCUGGGUGGACaaa----UGAGuc -5' |
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28914 | 3' | -48.4 | NC_006146.1 | + | 54060 | 0.71 | 0.976799 |
Target: 5'- -gGUCAGGGCCCACCUGgccGC-CGc -3' miRNA: 3'- ugUAGUUCUGGGUGGACaaaUGaGUc -5' |
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28914 | 3' | -48.4 | NC_006146.1 | + | 15082 | 0.7 | 0.987193 |
Target: 5'- gGC-UCcgcuGACUCACCUGUUUgACUCGGu -3' miRNA: 3'- -UGuAGuu--CUGGGUGGACAAA-UGAGUC- -5' |
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28914 | 3' | -48.4 | NC_006146.1 | + | 19270 | 0.69 | 0.992553 |
Target: 5'- gACcgCAAGACCC-CCUGccggguCUCGGu -3' miRNA: 3'- -UGuaGUUCUGGGuGGACaaau--GAGUC- -5' |
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28914 | 3' | -48.4 | NC_006146.1 | + | 92440 | 0.68 | 0.997098 |
Target: 5'- gACAUCAAagguGGCCCGCCUGg--GgUCuGa -3' miRNA: 3'- -UGUAGUU----CUGGGUGGACaaaUgAGuC- -5' |
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28914 | 3' | -48.4 | NC_006146.1 | + | 155359 | 0.67 | 0.997561 |
Target: 5'- gACG--AAGGCCCGCCUGUagaggaaguggUUGCgCAGg -3' miRNA: 3'- -UGUagUUCUGGGUGGACA-----------AAUGaGUC- -5' |
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28914 | 3' | -48.4 | NC_006146.1 | + | 39426 | 0.67 | 0.997961 |
Target: 5'- gGCAccCcAGACCCACCUGggUGCa--- -3' miRNA: 3'- -UGUa-GuUCUGGGUGGACaaAUGaguc -5' |
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28914 | 3' | -48.4 | NC_006146.1 | + | 158193 | 0.67 | 0.997961 |
Target: 5'- cCGUCAGGACCCcCUUGUcaaugGC-CAGg -3' miRNA: 3'- uGUAGUUCUGGGuGGACAaa---UGaGUC- -5' |
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28914 | 3' | -48.4 | NC_006146.1 | + | 133156 | 0.67 | 0.998304 |
Target: 5'- cACAUCccgGAGACCUGCCUGaa-ACUCc- -3' miRNA: 3'- -UGUAG---UUCUGGGUGGACaaaUGAGuc -5' |
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28914 | 3' | -48.4 | NC_006146.1 | + | 68845 | 0.67 | 0.998846 |
Target: 5'- gGC-UCAAGGCCCugCUGgcaag-CAGg -3' miRNA: 3'- -UGuAGUUCUGGGugGACaaaugaGUC- -5' |
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28914 | 3' | -48.4 | NC_006146.1 | + | 45373 | 0.66 | 0.999381 |
Target: 5'- uUAUCAAG-CCCGCCUGUUccCUg-- -3' miRNA: 3'- uGUAGUUCuGGGUGGACAAauGAguc -5' |
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28914 | 3' | -48.4 | NC_006146.1 | + | 61978 | 0.66 | 0.999381 |
Target: 5'- cCGUUGAGGCCCACgUcaccUGCUCGGu -3' miRNA: 3'- uGUAGUUCUGGGUGgAcaa-AUGAGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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