miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28914 5' -61.3 NC_006146.1 + 42639 0.66 0.739408
Target:  5'- cCGCCGuGgGCCU-CACGUagugGGCCCa -3'
miRNA:   3'- -GCGGCuCgUGGAcGUGCGgga-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 147400 0.66 0.739408
Target:  5'- aCGgCGGGCACCUcccagaGCGaGCCCaccaGCCCg -3'
miRNA:   3'- -GCgGCUCGUGGA------CGUgCGGGac--UGGG- -5'
28914 5' -61.3 NC_006146.1 + 59274 0.66 0.739408
Target:  5'- gGCCGAcgucuucgcGgACCUggGCugGCaguacaCUGACCCu -3'
miRNA:   3'- gCGGCU---------CgUGGA--CGugCGg-----GACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 78737 0.66 0.739408
Target:  5'- gGCCGGGCccGCCccccaGCAgcaGCCCcaggccgGGCCCg -3'
miRNA:   3'- gCGGCUCG--UGGa----CGUg--CGGGa------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 78677 0.66 0.739408
Target:  5'- gGCCGGGCccGCCccccaGCAgcaGCCCcaggccgGGCCCg -3'
miRNA:   3'- gCGGCUCG--UGGa----CGUg--CGGGa------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 78587 0.66 0.739408
Target:  5'- gGCCGGGCccGCCccccaGCAgcaGCCCcaggccgGGCCCg -3'
miRNA:   3'- gCGGCUCG--UGGa----CGUg--CGGGa------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 51929 0.66 0.739408
Target:  5'- cCGaCGGGCGgccccggugcggUCUGCGCGCCaaCUGGCgCCg -3'
miRNA:   3'- -GCgGCUCGU------------GGACGUGCGG--GACUG-GG- -5'
28914 5' -61.3 NC_006146.1 + 109606 0.66 0.739408
Target:  5'- aCGCCGcGCGCCgcaaaCACGCgaCaGGCCCc -3'
miRNA:   3'- -GCGGCuCGUGGac---GUGCGg-GaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 301 0.66 0.739408
Target:  5'- gGgCGGGC-CCgGCGCGCUCgccacGCCCa -3'
miRNA:   3'- gCgGCUCGuGGaCGUGCGGGac---UGGG- -5'
28914 5' -61.3 NC_006146.1 + 120473 0.66 0.739408
Target:  5'- gGCCGcgaagcuugcGGCcuGCCUGC-CGuCCCUGGCggCCg -3'
miRNA:   3'- gCGGC----------UCG--UGGACGuGC-GGGACUG--GG- -5'
28914 5' -61.3 NC_006146.1 + 125490 0.66 0.739408
Target:  5'- gGCCGGG-GCCU---CGCgCUGGCCCa -3'
miRNA:   3'- gCGGCUCgUGGAcguGCGgGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 161758 0.66 0.739408
Target:  5'- gGCUGAGguCCgaggGgGCGCCUgggcgggGGCCUg -3'
miRNA:   3'- gCGGCUCguGGa---CgUGCGGGa------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 157728 0.66 0.739408
Target:  5'- gGCCGGGCagGCCggGCAgGCCgggucuugGGCCUg -3'
miRNA:   3'- gCGGCUCG--UGGa-CGUgCGGga------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 154651 0.66 0.739408
Target:  5'- gGCCGGGCagGCCggGCAgGCCgggucuugGGCCUg -3'
miRNA:   3'- gCGGCUCG--UGGa-CGUgCGGga------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 151573 0.66 0.739408
Target:  5'- gGCCGGGCagGCCggGCAgGCCgggucuugGGCCUg -3'
miRNA:   3'- gCGGCUCG--UGGa-CGUgCGGga------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 148495 0.66 0.739408
Target:  5'- gGCCGGGCagGCCggGCAgGCCgggucuugGGCCUg -3'
miRNA:   3'- gCGGCUCG--UGGa-CGUgCGGga------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 145417 0.66 0.739408
Target:  5'- gGCCGGGCagGCCggGCAgGCCgggucuugGGCCUg -3'
miRNA:   3'- gCGGCUCG--UGGa-CGUgCGGga------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 142339 0.66 0.739408
Target:  5'- gGCCGGGCagGCCggGCAgGCCgggucuugGGCCUg -3'
miRNA:   3'- gCGGCUCG--UGGa-CGUgCGGga------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 78885 0.66 0.739408
Target:  5'- gGCCGGGCccGCCccccaGCAgcaGCCCcaggccgGGCCCg -3'
miRNA:   3'- gCGGCUCG--UGGa----CGUg--CGGGa------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 206 0.66 0.738477
Target:  5'- gCGCCGGuGCcCCcGCgacgguccccgggGCGcCCCUGGCCUc -3'
miRNA:   3'- -GCGGCU-CGuGGaCG-------------UGC-GGGACUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.