miRNA display CGI


Results 81 - 100 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28914 5' -61.3 NC_006146.1 + 54077 0.66 0.691941
Target:  5'- cCGCCGcgucccGGCAcacguCCUGgACGCCCUccaccacGCCCu -3'
miRNA:   3'- -GCGGC------UCGU-----GGACgUGCGGGAc------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 63983 0.66 0.701557
Target:  5'- gGCUGAGguUCUGCugGCuuCCaGuCCCa -3'
miRNA:   3'- gCGGCUCguGGACGugCG--GGaCuGGG- -5'
28914 5' -61.3 NC_006146.1 + 20677 0.66 0.708257
Target:  5'- -uCUGGGCGCCauuuugucuccgcgUGCGCauaauggcgGCCCUGgACCCa -3'
miRNA:   3'- gcGGCUCGUGG--------------ACGUG---------CGGGAC-UGGG- -5'
28914 5' -61.3 NC_006146.1 + 67890 0.66 0.71112
Target:  5'- gGCCGAG-ACCaGCACGaaCUGGgCCu -3'
miRNA:   3'- gCGGCUCgUGGaCGUGCggGACUgGG- -5'
28914 5' -61.3 NC_006146.1 + 14776 0.66 0.691941
Target:  5'- gGCuCGGGCACCUGUugGCggCUGAg-- -3'
miRNA:   3'- gCG-GCUCGUGGACGugCGg-GACUggg -5'
28914 5' -61.3 NC_006146.1 + 144748 0.66 0.691941
Target:  5'- cCGCCGGGguCCcuccgGC-CgGCCUgaugGACCCg -3'
miRNA:   3'- -GCGGCUCguGGa----CGuG-CGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 21066 0.66 0.701557
Target:  5'- uCGCCGAgGC-CCUgGC-CGCCCacaccACCCg -3'
miRNA:   3'- -GCGGCU-CGuGGA-CGuGCGGGac---UGGG- -5'
28914 5' -61.3 NC_006146.1 + 127602 0.66 0.691941
Target:  5'- gGCCGGGUgagagugacuaACCUGgGCGgCaCCgccGGCCCg -3'
miRNA:   3'- gCGGCUCG-----------UGGACgUGC-G-GGa--CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 16170 0.66 0.701557
Target:  5'- aGCCGAGCGuugucuugCUGCugGCC---GCCCu -3'
miRNA:   3'- gCGGCUCGUg-------GACGugCGGgacUGGG- -5'
28914 5' -61.3 NC_006146.1 + 157060 0.66 0.691941
Target:  5'- cCGCCGGGguCCcuccgGC-CgGCCUgaugGACCCg -3'
miRNA:   3'- -GCGGCUCguGGa----CGuG-CGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 153982 0.66 0.691941
Target:  5'- cCGCCGGGguCCcuccgGC-CgGCCUgaugGACCCg -3'
miRNA:   3'- -GCGGCUCguGGa----CGuG-CGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 150904 0.66 0.691941
Target:  5'- cCGCCGGGguCCcuccgGC-CgGCCUgaugGACCCg -3'
miRNA:   3'- -GCGGCUCguGGa----CGuG-CGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 141671 0.66 0.691941
Target:  5'- cCGCCGGGguCCcuccgGC-CgGCCUgaugGACCCg -3'
miRNA:   3'- -GCGGCUCguGGa----CGuG-CGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 147826 0.66 0.691941
Target:  5'- cCGCCGGGguCCcuccgGC-CgGCCUgaugGACCCg -3'
miRNA:   3'- -GCGGCUCguGGa----CGuG-CGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 148942 0.67 0.643332
Target:  5'- gGCUGGucuCGCUUGCugGCCCcaaUGGCCg -3'
miRNA:   3'- gCGGCUc--GUGGACGugCGGG---ACUGGg -5'
28914 5' -61.3 NC_006146.1 + 82511 0.67 0.653099
Target:  5'- gGCCGuggucAGgGCCUGCACGCCUgguaauaucaGCCUu -3'
miRNA:   3'- gCGGC-----UCgUGGACGUGCGGGac--------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 52399 0.67 0.653099
Target:  5'- aCGCCGAGUACgUGgGgGCCgUcaaGACCg -3'
miRNA:   3'- -GCGGCUCGUGgACgUgCGGgA---CUGGg -5'
28914 5' -61.3 NC_006146.1 + 125005 0.67 0.643332
Target:  5'- gGCCGGGCGCUgagaaaucuCAUGCCCUacggaACCCc -3'
miRNA:   3'- gCGGCUCGUGGac-------GUGCGGGAc----UGGG- -5'
28914 5' -61.3 NC_006146.1 + 158177 0.67 0.643332
Target:  5'- gGCUGGucuCGCUUGCugGCCCcaaUGGCCg -3'
miRNA:   3'- gCGGCUc--GUGGACGugCGGG---ACUGGg -5'
28914 5' -61.3 NC_006146.1 + 152020 0.67 0.643332
Target:  5'- gGCUGGucuCGCUUGCugGCCCcaaUGGCCg -3'
miRNA:   3'- gCGGCUc--GUGGACGugCGGG---ACUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.