miRNA display CGI


Results 41 - 60 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28914 5' -61.3 NC_006146.1 + 111212 0.71 0.445675
Target:  5'- cCGCCuccGGCACCgGCAuugcCGCCgUGACUCa -3'
miRNA:   3'- -GCGGc--UCGUGGaCGU----GCGGgACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 105085 0.71 0.445675
Target:  5'- gGCuCGAGCGCCUgGCGCaGCUcgucuCUGGCCUc -3'
miRNA:   3'- gCG-GCUCGUGGA-CGUG-CGG-----GACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 165684 0.71 0.437031
Target:  5'- gGCCGgcaAGgACCUGCAC-CCCUagcucccccaGGCCCa -3'
miRNA:   3'- gCGGC---UCgUGGACGUGcGGGA----------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 83701 0.71 0.428484
Target:  5'- aGuCUGuGCugCUGCACaGCCUguagGACCCu -3'
miRNA:   3'- gC-GGCuCGugGACGUG-CGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 8039 0.71 0.41169
Target:  5'- uCGCUG-GCACCcGCugGaCCC-GGCCCu -3'
miRNA:   3'- -GCGGCuCGUGGaCGugC-GGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 128863 0.71 0.403448
Target:  5'- gGUCGAGCucACCgGCGugaGCCCgGGCCCa -3'
miRNA:   3'- gCGGCUCG--UGGaCGUg--CGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 169383 0.71 0.420036
Target:  5'- gGCUG-GCGCCggGcCGCGCCCccGGCCCc -3'
miRNA:   3'- gCGGCuCGUGGa-C-GUGCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 170314 0.71 0.420036
Target:  5'- gGCUG-GCGCCggGcCGCGCCCccGGCCCc -3'
miRNA:   3'- gCGGCuCGUGGa-C-GUGCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 162363 0.71 0.41169
Target:  5'- gCGCCuuggagaugGAGCcCCUugGCGCGCCCgcgcccggGACCCc -3'
miRNA:   3'- -GCGG---------CUCGuGGA--CGUGCGGGa-------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 167519 0.71 0.420036
Target:  5'- gGCUG-GCGCCggGcCGCGCCCccGGCCCc -3'
miRNA:   3'- gCGGCuCGUGGa-C-GUGCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 155846 0.71 0.403448
Target:  5'- cCGCC-AGUGCCUccucGCAgGCCCggcgGGCCCu -3'
miRNA:   3'- -GCGGcUCGUGGA----CGUgCGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 150706 0.71 0.428484
Target:  5'- uGCCcAGCcuCCUGCGCcCCCgggGGCCCu -3'
miRNA:   3'- gCGGcUCGu-GGACGUGcGGGa--CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 168451 0.71 0.420036
Target:  5'- gGCUG-GCGCCggGcCGCGCCCccGGCCCc -3'
miRNA:   3'- gCGGCuCGUGGa-C-GUGCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 119240 0.71 0.428484
Target:  5'- -uCUGAGUcCCgGCACcgGCCCUGGCCCc -3'
miRNA:   3'- gcGGCUCGuGGaCGUG--CGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 44064 0.71 0.445675
Target:  5'- uGuuGgGGCGCCUGCAUGCCggGACUg -3'
miRNA:   3'- gCggC-UCGUGGACGUGCGGgaCUGGg -5'
28914 5' -61.3 NC_006146.1 + 45711 0.71 0.437031
Target:  5'- uCGCaguaGAGCAgCgggGcCACGaCCCUGACCUg -3'
miRNA:   3'- -GCGg---CUCGUgGa--C-GUGC-GGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 44245 0.71 0.431891
Target:  5'- gGCCGGGCGgcgguguccauugccCCUGCGgGCCCcggggUGugCCc -3'
miRNA:   3'- gCGGCUCGU---------------GGACGUgCGGG-----ACugGG- -5'
28914 5' -61.3 NC_006146.1 + 146529 0.71 0.445675
Target:  5'- gCGCCGcGC-CCUggaGCugGCCCUGcGCCa -3'
miRNA:   3'- -GCGGCuCGuGGA---CGugCGGGAC-UGGg -5'
28914 5' -61.3 NC_006146.1 + 43802 0.7 0.490259
Target:  5'- -uCUGGGCguGCCUGUcccaccgcucCGCCCUGGCCCu -3'
miRNA:   3'- gcGGCUCG--UGGACGu---------GCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 106635 0.7 0.490259
Target:  5'- uGCCGcAGCGCCUGCuGCGgCCggcuggucagGGCCg -3'
miRNA:   3'- gCGGC-UCGUGGACG-UGCgGGa---------CUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.