miRNA display CGI


Results 61 - 80 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28914 5' -61.3 NC_006146.1 + 41622 0.7 0.455293
Target:  5'- cCGCUGGGC-CCggGCGCagaccagccccacauCCCUGACCCu -3'
miRNA:   3'- -GCGGCUCGuGGa-CGUGc--------------GGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 170434 0.7 0.472165
Target:  5'- cCGCgGGGC-CCgGCGCGUgCCggggGACCCg -3'
miRNA:   3'- -GCGgCUCGuGGaCGUGCG-GGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 169503 0.7 0.472165
Target:  5'- cCGCgGGGC-CCgGCGCGUgCCggggGACCCg -3'
miRNA:   3'- -GCGgCUCGuGGaCGUGCG-GGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 2795 0.7 0.490259
Target:  5'- aCGCCaGGCGCCaGCAgGCCUUccaGACCa -3'
miRNA:   3'- -GCGGcUCGUGGaCGUgCGGGA---CUGGg -5'
28914 5' -61.3 NC_006146.1 + 43802 0.7 0.490259
Target:  5'- -uCUGGGCguGCCUGUcccaccgcucCGCCCUGGCCCu -3'
miRNA:   3'- gcGGCUCG--UGGACGu---------GCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 106635 0.7 0.490259
Target:  5'- uGCCGcAGCGCCUGCuGCGgCCggcuggucagGGCCg -3'
miRNA:   3'- gCGGC-UCGUGGACG-UGCgGGa---------CUGGg -5'
28914 5' -61.3 NC_006146.1 + 42117 0.7 0.499427
Target:  5'- aCGacuaCGAGgGCCUcugGCACGCCgUGuCCCu -3'
miRNA:   3'- -GCg---GCUCgUGGA---CGUGCGGgACuGGG- -5'
28914 5' -61.3 NC_006146.1 + 42705 0.7 0.499427
Target:  5'- gGCCcGGCGCCgcgGCGCccCCCUGGgCCg -3'
miRNA:   3'- gCGGcUCGUGGa--CGUGc-GGGACUgGG- -5'
28914 5' -61.3 NC_006146.1 + 47726 0.7 0.481171
Target:  5'- gCGCCcgGAGCucgucguccgggGCCUccucGCGCGCCCUGGCg- -3'
miRNA:   3'- -GCGG--CUCG------------UGGA----CGUGCGGGACUGgg -5'
28914 5' -61.3 NC_006146.1 + 168571 0.7 0.472165
Target:  5'- cCGCgGGGC-CCgGCGCGUgCCggggGACCCg -3'
miRNA:   3'- -GCGgCUCGuGGaCGUGCG-GGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 167639 0.7 0.490259
Target:  5'- cCGCgGGGC-CCgGCGCGUgCCgggGGCCCg -3'
miRNA:   3'- -GCGgCUCGuGGaCGUGCG-GGa--CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 103488 0.7 0.499427
Target:  5'- uGuCCGAGCACgUGCGCGUCCaGAagcugaacaUCCg -3'
miRNA:   3'- gC-GGCUCGUGgACGUGCGGGaCU---------GGG- -5'
28914 5' -61.3 NC_006146.1 + 33169 0.7 0.499427
Target:  5'- gGCUGGGCACCgccGCGCcgccgcucgGUCCUGGgCCu -3'
miRNA:   3'- gCGGCUCGUGGa--CGUG---------CGGGACUgGG- -5'
28914 5' -61.3 NC_006146.1 + 146055 0.7 0.463245
Target:  5'- aGCUGcAGCACCUGCuuGUUggUGACCCg -3'
miRNA:   3'- gCGGC-UCGUGGACGugCGGg-ACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 13558 0.69 0.517985
Target:  5'- gCGCCGGGCGCCgggcugcgcaaGCAgGCCgggGGCUCa -3'
miRNA:   3'- -GCGGCUCGUGGa----------CGUgCGGga-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 71891 0.69 0.531136
Target:  5'- gGCCGucacGCGgacccuCCUGCGCGCggccucugaccugggCCUGACCUg -3'
miRNA:   3'- gCGGCu---CGU------GGACGUGCG---------------GGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 116174 0.69 0.517985
Target:  5'- -cCUGAGUcuccCCUcgGC-CGCCCUGACCCg -3'
miRNA:   3'- gcGGCUCGu---GGA--CGuGCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 120605 0.69 0.521729
Target:  5'- gGCCcGGCGgcgccugacagaucuCCUGCGCcCCUUGGCCCc -3'
miRNA:   3'- gCGGcUCGU---------------GGACGUGcGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 41588 0.69 0.53681
Target:  5'- gCGaggaCGAGCucagguuCCUGCACcuguCCCUGACCa -3'
miRNA:   3'- -GCg---GCUCGu------GGACGUGc---GGGACUGGg -5'
28914 5' -61.3 NC_006146.1 + 114651 0.69 0.527366
Target:  5'- cCGCCGAGgacggcccCGCCUcCGCcCCCgcgGACCCg -3'
miRNA:   3'- -GCGGCUC--------GUGGAcGUGcGGGa--CUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.