Results 81 - 100 of 309 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28914 | 5' | -61.3 | NC_006146.1 | + | 112983 | 0.69 | 0.517985 |
Target: 5'- gCGCCGgccAGCGCCcucUGCAUGUCCUGGacaaggcgccguUCCa -3' miRNA: 3'- -GCGGC---UCGUGG---ACGUGCGGGACU------------GGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 35030 | 0.69 | 0.527366 |
Target: 5'- aCGcCCGGGUcaugACCUGUcacuCGCCUUGuCCCg -3' miRNA: 3'- -GC-GGCUCG----UGGACGu---GCGGGACuGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 96235 | 0.69 | 0.527366 |
Target: 5'- cCGUCGAGUACCUGCcccggagcgACGaguaCgUGGCCUa -3' miRNA: 3'- -GCGGCUCGUGGACG---------UGCg---GgACUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 149659 | 0.69 | 0.546312 |
Target: 5'- gCGCCGGcagcGCGCCUGCACGaaCUugcaGGCCg -3' miRNA: 3'- -GCGGCU----CGUGGACGUGCggGA----CUGGg -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 65195 | 0.69 | 0.546312 |
Target: 5'- aGCCcuaGGCGCuCUGgGgGCCCUGggaGCCCg -3' miRNA: 3'- gCGGc--UCGUG-GACgUgCGGGAC---UGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 160162 | 0.69 | 0.50867 |
Target: 5'- aGCCGcauGGCcCCgGCugGCUCUGgcuGCCCa -3' miRNA: 3'- gCGGC---UCGuGGaCGugCGGGAC---UGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 3648 | 0.69 | 0.51705 |
Target: 5'- uCGCUGAGCuCCUGCcucaccaGCGUUCUGucacACCCc -3' miRNA: 3'- -GCGGCUCGuGGACG-------UGCGGGAC----UGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 100203 | 0.69 | 0.565471 |
Target: 5'- uCGCCaGAGaCACCagGCG-GCCCgUGGCCUg -3' miRNA: 3'- -GCGG-CUC-GUGGa-CGUgCGGG-ACUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 114651 | 0.69 | 0.527366 |
Target: 5'- cCGCCGAGgacggcccCGCCUcCGCcCCCgcgGACCCg -3' miRNA: 3'- -GCGGCUC--------GUGGAcGUGcGGGa--CUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 71891 | 0.69 | 0.531136 |
Target: 5'- gGCCGucacGCGgacccuCCUGCGCGCggccucugaccugggCCUGACCUg -3' miRNA: 3'- gCGGCu---CGU------GGACGUGCG---------------GGACUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 14167 | 0.69 | 0.546312 |
Target: 5'- aGCUGAGCGUCUGCGCcagGCUg-GACCCc -3' miRNA: 3'- gCGGCUCGUGGACGUG---CGGgaCUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 14274 | 0.69 | 0.546312 |
Target: 5'- aGgCGAcagaaugaccGCGCgUGCAgCGCCCUGuCCCu -3' miRNA: 3'- gCgGCU----------CGUGgACGU-GCGGGACuGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 116834 | 0.69 | 0.565471 |
Target: 5'- uGCCGGGacgcggcgGCCagGUggGCCCUGACCa -3' miRNA: 3'- gCGGCUCg-------UGGa-CGugCGGGACUGGg -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 116174 | 0.69 | 0.517985 |
Target: 5'- -cCUGAGUcuccCCUcgGC-CGCCCUGACCCg -3' miRNA: 3'- gcGGCUCGu---GGA--CGuGCGGGACUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 120605 | 0.69 | 0.521729 |
Target: 5'- gGCCcGGCGgcgccugacagaucuCCUGCGCcCCUUGGCCCc -3' miRNA: 3'- gCGGcUCGU---------------GGACGUGcGGGACUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 13558 | 0.69 | 0.517985 |
Target: 5'- gCGCCGGGCGCCgggcugcgcaaGCAgGCCgggGGCUCa -3' miRNA: 3'- -GCGGCUCGUGGa----------CGUgCGGga-CUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 41588 | 0.69 | 0.53681 |
Target: 5'- gCGaggaCGAGCucagguuCCUGCACcuguCCCUGACCa -3' miRNA: 3'- -GCg---GCUCGu------GGACGUGc---GGGACUGGg -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 71577 | 0.69 | 0.546312 |
Target: 5'- aGCCaGAGCGgCUuccgcagcagGuCugGCCCUGACCa -3' miRNA: 3'- gCGG-CUCGUgGA----------C-GugCGGGACUGGg -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 122263 | 0.69 | 0.53681 |
Target: 5'- gCGCUGGGCACCcGCccggaGCCCgccCCCa -3' miRNA: 3'- -GCGGCUCGUGGaCGug---CGGGacuGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 87126 | 0.69 | 0.50867 |
Target: 5'- aGCaggugaGGGUGCCucUGUuuacCGCCCUGGCCCu -3' miRNA: 3'- gCGg-----CUCGUGG--ACGu---GCGGGACUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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