miRNA display CGI


Results 101 - 120 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28914 5' -61.3 NC_006146.1 + 11844 0.68 0.575117
Target:  5'- gCGCCGGGC-CCUGCuucucGgGCUUggggcgGGCCCg -3'
miRNA:   3'- -GCGGCUCGuGGACG-----UgCGGGa-----CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 55636 0.68 0.594513
Target:  5'- cCGCCuacGAGUACCguaGCACGgugaauCCCUGGgCCu -3'
miRNA:   3'- -GCGG---CUCGUGGa--CGUGC------GGGACUgGG- -5'
28914 5' -61.3 NC_006146.1 + 1518 0.68 0.594513
Target:  5'- gGCCGGGgGCgCggcccgGCGCcaGCCCUGcCCCc -3'
miRNA:   3'- gCGGCUCgUG-Ga-----CGUG--CGGGACuGGG- -5'
28914 5' -61.3 NC_006146.1 + 775 0.68 0.575117
Target:  5'- aGCCGAGCGugaCgacgGgACGCCCcgccGGCCCc -3'
miRNA:   3'- gCGGCUCGUg--Ga---CgUGCGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 1706 0.68 0.575117
Target:  5'- aGCCGAGCGugaCgacgGgACGCCCcgccGGCCCc -3'
miRNA:   3'- gCGGCUCGUg--Ga---CgUGCGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 76761 0.68 0.594513
Target:  5'- gGCaCGAGCAgCCcgaGUACGUcuacagcuuCCUGGCCCg -3'
miRNA:   3'- gCG-GCUCGU-GGa--CGUGCG---------GGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 3382 0.68 0.594513
Target:  5'- gGCCGGGgGCgCggcccgGCGCcaGCCCUGcCCCc -3'
miRNA:   3'- gCGGCUCgUG-Ga-----CGUG--CGGGACuGGG- -5'
28914 5' -61.3 NC_006146.1 + 478 0.68 0.603277
Target:  5'- gCGCCGGGC-CCcGCGggaccccccccucCGCCCccgaGGCCCc -3'
miRNA:   3'- -GCGGCUCGuGGaCGU-------------GCGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 587 0.68 0.594513
Target:  5'- gGCCGGGgGCgCggcccgGCGCcaGCCCUGcCCCc -3'
miRNA:   3'- gCGGCUCgUG-Ga-----CGUG--CGGGACuGGG- -5'
28914 5' -61.3 NC_006146.1 + 155867 0.68 0.594513
Target:  5'- gGcCCGAG-ACCUGgGgGCCCgGGCCUg -3'
miRNA:   3'- gC-GGCUCgUGGACgUgCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 152789 0.68 0.594513
Target:  5'- gGcCCGAG-ACCUGgGgGCCCgGGCCUg -3'
miRNA:   3'- gC-GGCUCgUGGACgUgCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 149711 0.68 0.594513
Target:  5'- gGcCCGAG-ACCUGgGgGCCCgGGCCUg -3'
miRNA:   3'- gC-GGCUCgUGGACgUgCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 146634 0.68 0.594513
Target:  5'- gGcCCGAG-ACCUGgGgGCCCgGGCCUg -3'
miRNA:   3'- gC-GGCUCgUGGACgUgCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 143556 0.68 0.594513
Target:  5'- gGcCCGAG-ACCUGgGgGCCCgGGCCUg -3'
miRNA:   3'- gC-GGCUCgUGGACgUgCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 103108 0.68 0.594513
Target:  5'- gGCgGGGCagaGCCUGgccgccguCACGuCCCUGGCCg -3'
miRNA:   3'- gCGgCUCG---UGGAC--------GUGC-GGGACUGGg -5'
28914 5' -61.3 NC_006146.1 + 102717 0.68 0.584799
Target:  5'- aGCCGcuGCGCC--CGCGUCCUGACgCu -3'
miRNA:   3'- gCGGCu-CGUGGacGUGCGGGACUGgG- -5'
28914 5' -61.3 NC_006146.1 + 101032 0.68 0.584799
Target:  5'- gGCCGuGgACCUGggccucUACGCCC-GACCUc -3'
miRNA:   3'- gCGGCuCgUGGAC------GUGCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 3570 0.68 0.575117
Target:  5'- aGCCGAGCGugaCgacgGgACGCCCcgccGGCCCc -3'
miRNA:   3'- gCGGCUCGUg--Ga---CgUGCGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 2638 0.68 0.575117
Target:  5'- aGCCGAGCGugaCgacgGgACGCCCcgccGGCCCc -3'
miRNA:   3'- gCGGCUCGUg--Ga---CgUGCGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 2450 0.68 0.594513
Target:  5'- gGCCGGGgGCgCggcccgGCGCcaGCCCUGcCCCc -3'
miRNA:   3'- gCGGCUCgUG-Ga-----CGUG--CGGGACuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.