miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28914 5' -61.3 NC_006146.1 + 15660 1.11 0.000768
Target:  5'- gCGCCGAGCACCUGCACGCCCUGACCCa -3'
miRNA:   3'- -GCGGCUCGUGGACGUGCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 20915 0.81 0.107086
Target:  5'- gGCCcuGAGUccggccgACCUGCAgGCCCUGGCCCc -3'
miRNA:   3'- gCGG--CUCG-------UGGACGUgCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 23771 0.79 0.148226
Target:  5'- gGCCGAGaauggcgGCCUGCGCGUCUggGGCCCg -3'
miRNA:   3'- gCGGCUCg------UGGACGUGCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 138751 0.78 0.159492
Target:  5'- aGCUGAGCgGCCUGcCACgGCCCUGGCUa -3'
miRNA:   3'- gCGGCUCG-UGGAC-GUG-CGGGACUGGg -5'
28914 5' -61.3 NC_006146.1 + 157359 0.77 0.177414
Target:  5'- gCGCCcGGCGCCUGCagcagguuccuguccACGCCUcGGCCCa -3'
miRNA:   3'- -GCGGcUCGUGGACG---------------UGCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 102310 0.76 0.202794
Target:  5'- uCGCC---CACCUGCACGCCCgggggcaGGCCCa -3'
miRNA:   3'- -GCGGcucGUGGACGUGCGGGa------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 127618 0.76 0.210605
Target:  5'- aCGCUaGGCACCUGCcggaccuccaggcCGCCCUGugCCu -3'
miRNA:   3'- -GCGGcUCGUGGACGu------------GCGGGACugGG- -5'
28914 5' -61.3 NC_006146.1 + 46108 0.76 0.21765
Target:  5'- uCGCgCGAGCAgCagcagGCAUGCCCgGGCCCu -3'
miRNA:   3'- -GCG-GCUCGUgGa----CGUGCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 112884 0.76 0.222805
Target:  5'- gGCCGGGC-UCUGCGCgaagGCCgaGACCCg -3'
miRNA:   3'- gCGGCUCGuGGACGUG----CGGgaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 155327 0.75 0.24447
Target:  5'- uCGCCGAcGCGCCUGUcCuCCCaggGACCCg -3'
miRNA:   3'- -GCGGCU-CGUGGACGuGcGGGa--CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 151307 0.75 0.250153
Target:  5'- uGCCGGGguCCcuccgGCugGCCUggGACCCg -3'
miRNA:   3'- gCGGCUCguGGa----CGugCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 148229 0.75 0.250153
Target:  5'- uGCCGGGguCCcuccgGCugGCCUggGACCCg -3'
miRNA:   3'- gCGGCUCguGGa----CGugCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 142073 0.75 0.250153
Target:  5'- uGCCGGGguCCcuccgGCugGCCUggGACCCg -3'
miRNA:   3'- gCGGCUCguGGa----CGugCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 145151 0.75 0.250153
Target:  5'- uGCCGGGguCCcuccgGCugGCCUggGACCCg -3'
miRNA:   3'- gCGGCUCguGGa----CGugCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 154385 0.75 0.250153
Target:  5'- uGCCGGGguCCcuccgGCugGCCUggGACCCg -3'
miRNA:   3'- gCGGCUCguGGa----CGugCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 157463 0.75 0.250153
Target:  5'- uGCCGGGguCCcuccgGCugGCCUggGACCCg -3'
miRNA:   3'- gCGGCUCguGGa----CGugCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 127557 0.75 0.255944
Target:  5'- uGCCacgggcuGCGCCUGCugGCCCUGGgCg -3'
miRNA:   3'- gCGGcu-----CGUGGACGugCGGGACUgGg -5'
28914 5' -61.3 NC_006146.1 + 15923 0.75 0.255944
Target:  5'- uGCCGGGC-CCUGCGCgagGCCgugCUGACCg -3'
miRNA:   3'- gCGGCUCGuGGACGUG---CGG---GACUGGg -5'
28914 5' -61.3 NC_006146.1 + 146792 0.74 0.293017
Target:  5'- gGCCcGGUGCCaGC-CGCCCUcGACCCg -3'
miRNA:   3'- gCGGcUCGUGGaCGuGCGGGA-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 101036 0.73 0.313073
Target:  5'- gGCCucGguCCUGCAUGCCUgcgccugcgUGACCCg -3'
miRNA:   3'- gCGGcuCguGGACGUGCGGG---------ACUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.