Results 21 - 40 of 309 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28914 | 5' | -61.3 | NC_006146.1 | + | 115247 | 0.73 | 0.319985 |
Target: 5'- aCGCCGccuggcuccGGCugCUGCAC-CCCUcgggGGCCCu -3' miRNA: 3'- -GCGGC---------UCGugGACGUGcGGGA----CUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 118438 | 0.73 | 0.345811 |
Target: 5'- gGCCGAGguCCUGCACGgCggcuacaacggggUGGCCCa -3' miRNA: 3'- gCGGCUCguGGACGUGCgGg------------ACUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 52551 | 0.73 | 0.348771 |
Target: 5'- cCGCCGAGCGgUagaUGUucacGCGCCCgccGGCCCu -3' miRNA: 3'- -GCGGCUCGUgG---ACG----UGCGGGa--CUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 52843 | 0.72 | 0.356251 |
Target: 5'- gGCCGAGcCGCC-GC-CGCCCccGCCCg -3' miRNA: 3'- gCGGCUC-GUGGaCGuGCGGGacUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 170595 | 0.72 | 0.356251 |
Target: 5'- aGCUGGGCgugGCgaGCGCGCCg-GGCCCg -3' miRNA: 3'- gCGGCUCG---UGgaCGUGCGGgaCUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 128137 | 0.72 | 0.356251 |
Target: 5'- gCGCCGccuGCACCUGUcgGCCCUGcuGCCg -3' miRNA: 3'- -GCGGCu--CGUGGACGugCGGGAC--UGGg -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 110995 | 0.72 | 0.356251 |
Target: 5'- aGCCGcGCACCagcagGUugGCCagcgugCUGGCCCg -3' miRNA: 3'- gCGGCuCGUGGa----CGugCGG------GACUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 127920 | 0.72 | 0.363842 |
Target: 5'- gCGCCGGGCugCUGCccacaaacuccGCGCUCaGcguGCCCg -3' miRNA: 3'- -GCGGCUCGugGACG-----------UGCGGGaC---UGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 55705 | 0.72 | 0.363842 |
Target: 5'- cCGCCGGGgGgcUCUGCcCGCCgCUGGCCUc -3' miRNA: 3'- -GCGGCUCgU--GGACGuGCGG-GACUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 22154 | 0.72 | 0.371545 |
Target: 5'- aGCCuGGUGCCucUGgAgGCCCUGGCCCc -3' miRNA: 3'- gCGGcUCGUGG--ACgUgCGGGACUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 15998 | 0.72 | 0.371545 |
Target: 5'- aGCCuGGUGCCucUGgAgGCCCUGGCCCc -3' miRNA: 3'- gCGGcUCGUGG--ACgUgCGGGACUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 12921 | 0.72 | 0.371545 |
Target: 5'- aGCCuGGUGCCucUGgAgGCCCUGGCCCc -3' miRNA: 3'- gCGGcUCGUGG--ACgUgCGGGACUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 19076 | 0.72 | 0.371545 |
Target: 5'- aGCCuGGUGCCucUGgAgGCCCUGGCCCc -3' miRNA: 3'- gCGGcUCGUGG--ACgUgCGGGACUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 25232 | 0.72 | 0.371545 |
Target: 5'- aGCCuGGUGCCucUGgAgGCCCUGGCCCc -3' miRNA: 3'- gCGGcUCGUGG--ACgUgCGGGACUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 28310 | 0.72 | 0.371545 |
Target: 5'- aGCCuGGUGCCucUGgAgGCCCUGGCCCc -3' miRNA: 3'- gCGGcUCGUGG--ACgUgCGGGACUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 128324 | 0.72 | 0.379358 |
Target: 5'- -cCCGGGCugguCCUGCugGCCCUGgagaugaaGCCg -3' miRNA: 3'- gcGGCUCGu---GGACGugCGGGAC--------UGGg -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 56679 | 0.72 | 0.386483 |
Target: 5'- uGCCGGGCcCCcugggGCugGCCCUGcuggacaACCUg -3' miRNA: 3'- gCGGCUCGuGGa----CGugCGGGAC-------UGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 41770 | 0.72 | 0.395311 |
Target: 5'- cCGCCGgaGGC-CCUGCgcccggGCGCCCgcucucaGGCCCu -3' miRNA: 3'- -GCGGC--UCGuGGACG------UGCGGGa------CUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 128863 | 0.71 | 0.403448 |
Target: 5'- gGUCGAGCucACCgGCGugaGCCCgGGCCCa -3' miRNA: 3'- gCGGCUCG--UGGaCGUg--CGGGaCUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 155846 | 0.71 | 0.403448 |
Target: 5'- cCGCC-AGUGCCUccucGCAgGCCCggcgGGCCCu -3' miRNA: 3'- -GCGGcUCGUGGA----CGUgCGGGa---CUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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