Results 61 - 80 of 309 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28914 | 5' | -61.3 | NC_006146.1 | + | 146055 | 0.7 | 0.463245 |
Target: 5'- aGCUGcAGCACCUGCuuGUUggUGACCCg -3' miRNA: 3'- gCGGC-UCGUGGACGugCGGg-ACUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 168571 | 0.7 | 0.472165 |
Target: 5'- cCGCgGGGC-CCgGCGCGUgCCggggGACCCg -3' miRNA: 3'- -GCGgCUCGuGGaCGUGCG-GGa---CUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 170434 | 0.7 | 0.472165 |
Target: 5'- cCGCgGGGC-CCgGCGCGUgCCggggGACCCg -3' miRNA: 3'- -GCGgCUCGuGGaCGUGCG-GGa---CUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 169503 | 0.7 | 0.472165 |
Target: 5'- cCGCgGGGC-CCgGCGCGUgCCggggGACCCg -3' miRNA: 3'- -GCGgCUCGuGGaCGUGCG-GGa---CUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 47726 | 0.7 | 0.481171 |
Target: 5'- gCGCCcgGAGCucgucguccgggGCCUccucGCGCGCCCUGGCg- -3' miRNA: 3'- -GCGG--CUCG------------UGGA----CGUGCGGGACUGgg -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 167639 | 0.7 | 0.490259 |
Target: 5'- cCGCgGGGC-CCgGCGCGUgCCgggGGCCCg -3' miRNA: 3'- -GCGgCUCGuGGaCGUGCG-GGa--CUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 43802 | 0.7 | 0.490259 |
Target: 5'- -uCUGGGCguGCCUGUcccaccgcucCGCCCUGGCCCu -3' miRNA: 3'- gcGGCUCG--UGGACGu---------GCGGGACUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 106635 | 0.7 | 0.490259 |
Target: 5'- uGCCGcAGCGCCUGCuGCGgCCggcuggucagGGCCg -3' miRNA: 3'- gCGGC-UCGUGGACG-UGCgGGa---------CUGGg -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 38115 | 0.7 | 0.490259 |
Target: 5'- uGCUGAGCAgCUGCGaGCCUgcagcGACCg -3' miRNA: 3'- gCGGCUCGUgGACGUgCGGGa----CUGGg -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 2795 | 0.7 | 0.490259 |
Target: 5'- aCGCCaGGCGCCaGCAgGCCUUccaGACCa -3' miRNA: 3'- -GCGGcUCGUGGaCGUgCGGGA---CUGGg -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 42705 | 0.7 | 0.499427 |
Target: 5'- gGCCcGGCGCCgcgGCGCccCCCUGGgCCg -3' miRNA: 3'- gCGGcUCGUGGa--CGUGc-GGGACUgGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 42117 | 0.7 | 0.499427 |
Target: 5'- aCGacuaCGAGgGCCUcugGCACGCCgUGuCCCu -3' miRNA: 3'- -GCg---GCUCgUGGA---CGUGCGGgACuGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 33169 | 0.7 | 0.499427 |
Target: 5'- gGCUGGGCACCgccGCGCcgccgcucgGUCCUGGgCCu -3' miRNA: 3'- gCGGCUCGUGGa--CGUG---------CGGGACUgGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 103488 | 0.7 | 0.499427 |
Target: 5'- uGuCCGAGCACgUGCGCGUCCaGAagcugaacaUCCg -3' miRNA: 3'- gC-GGCUCGUGgACGUGCGGGaCU---------GGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 160162 | 0.69 | 0.50867 |
Target: 5'- aGCCGcauGGCcCCgGCugGCUCUGgcuGCCCa -3' miRNA: 3'- gCGGC---UCGuGGaCGugCGGGAC---UGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 87126 | 0.69 | 0.50867 |
Target: 5'- aGCaggugaGGGUGCCucUGUuuacCGCCCUGGCCCu -3' miRNA: 3'- gCGg-----CUCGUGG--ACGu---GCGGGACUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 3648 | 0.69 | 0.51705 |
Target: 5'- uCGCUGAGCuCCUGCcucaccaGCGUUCUGucacACCCc -3' miRNA: 3'- -GCGGCUCGuGGACG-------UGCGGGAC----UGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 13558 | 0.69 | 0.517985 |
Target: 5'- gCGCCGGGCGCCgggcugcgcaaGCAgGCCgggGGCUCa -3' miRNA: 3'- -GCGGCUCGUGGa----------CGUgCGGga-CUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 112983 | 0.69 | 0.517985 |
Target: 5'- gCGCCGgccAGCGCCcucUGCAUGUCCUGGacaaggcgccguUCCa -3' miRNA: 3'- -GCGGC---UCGUGG---ACGUGCGGGACU------------GGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 116174 | 0.69 | 0.517985 |
Target: 5'- -cCUGAGUcuccCCUcgGC-CGCCCUGACCCg -3' miRNA: 3'- gcGGCUCGu---GGA--CGuGCGGGACUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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