miRNA display CGI


Results 81 - 100 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28914 5' -61.3 NC_006146.1 + 55049 0.69 0.517985
Target:  5'- gGCCGGG-GCCUGCcacagGCGgCCguaucgGACCCa -3'
miRNA:   3'- gCGGCUCgUGGACG-----UGCgGGa-----CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 120605 0.69 0.521729
Target:  5'- gGCCcGGCGgcgccugacagaucuCCUGCGCcCCUUGGCCCc -3'
miRNA:   3'- gCGGcUCGU---------------GGACGUGcGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 35030 0.69 0.527366
Target:  5'- aCGcCCGGGUcaugACCUGUcacuCGCCUUGuCCCg -3'
miRNA:   3'- -GC-GGCUCG----UGGACGu---GCGGGACuGGG- -5'
28914 5' -61.3 NC_006146.1 + 114651 0.69 0.527366
Target:  5'- cCGCCGAGgacggcccCGCCUcCGCcCCCgcgGACCCg -3'
miRNA:   3'- -GCGGCUC--------GUGGAcGUGcGGGa--CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 96235 0.69 0.527366
Target:  5'- cCGUCGAGUACCUGCcccggagcgACGaguaCgUGGCCUa -3'
miRNA:   3'- -GCGGCUCGUGGACG---------UGCg---GgACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 71891 0.69 0.531136
Target:  5'- gGCCGucacGCGgacccuCCUGCGCGCggccucugaccugggCCUGACCUg -3'
miRNA:   3'- gCGGCu---CGU------GGACGUGCG---------------GGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 122263 0.69 0.53681
Target:  5'- gCGCUGGGCACCcGCccggaGCCCgccCCCa -3'
miRNA:   3'- -GCGGCUCGUGGaCGug---CGGGacuGGG- -5'
28914 5' -61.3 NC_006146.1 + 41588 0.69 0.53681
Target:  5'- gCGaggaCGAGCucagguuCCUGCACcuguCCCUGACCa -3'
miRNA:   3'- -GCg---GCUCGu------GGACGUGc---GGGACUGGg -5'
28914 5' -61.3 NC_006146.1 + 14274 0.69 0.546312
Target:  5'- aGgCGAcagaaugaccGCGCgUGCAgCGCCCUGuCCCu -3'
miRNA:   3'- gCgGCU----------CGUGgACGU-GCGGGACuGGG- -5'
28914 5' -61.3 NC_006146.1 + 149659 0.69 0.546312
Target:  5'- gCGCCGGcagcGCGCCUGCACGaaCUugcaGGCCg -3'
miRNA:   3'- -GCGGCU----CGUGGACGUGCggGA----CUGGg -5'
28914 5' -61.3 NC_006146.1 + 65195 0.69 0.546312
Target:  5'- aGCCcuaGGCGCuCUGgGgGCCCUGggaGCCCg -3'
miRNA:   3'- gCGGc--UCGUG-GACgUgCGGGAC---UGGG- -5'
28914 5' -61.3 NC_006146.1 + 14167 0.69 0.546312
Target:  5'- aGCUGAGCGUCUGCGCcagGCUg-GACCCc -3'
miRNA:   3'- gCGGCUCGUGGACGUG---CGGgaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 71577 0.69 0.546312
Target:  5'- aGCCaGAGCGgCUuccgcagcagGuCugGCCCUGACCa -3'
miRNA:   3'- gCGG-CUCGUgGA----------C-GugCGGGACUGGg -5'
28914 5' -61.3 NC_006146.1 + 57883 0.69 0.555868
Target:  5'- uGCCGGGCGUCUGCuccauCGCCUcaaGGCCg -3'
miRNA:   3'- gCGGCUCGUGGACGu----GCGGGa--CUGGg -5'
28914 5' -61.3 NC_006146.1 + 130053 0.69 0.555868
Target:  5'- aGCCGGGCcuCCaagaGCGCcCCCUGcCCCu -3'
miRNA:   3'- gCGGCUCGu-GGa---CGUGcGGGACuGGG- -5'
28914 5' -61.3 NC_006146.1 + 49949 0.69 0.555868
Target:  5'- cCGCCGuGUACUUGCGCacgugcaagGCCCgcgguuuugGACCg -3'
miRNA:   3'- -GCGGCuCGUGGACGUG---------CGGGa--------CUGGg -5'
28914 5' -61.3 NC_006146.1 + 99218 0.69 0.555868
Target:  5'- gGCCGcGGCcUCgGCGCGCCC-GACCa -3'
miRNA:   3'- gCGGC-UCGuGGaCGUGCGGGaCUGGg -5'
28914 5' -61.3 NC_006146.1 + 116834 0.69 0.565471
Target:  5'- uGCCGGGacgcggcgGCCagGUggGCCCUGACCa -3'
miRNA:   3'- gCGGCUCg-------UGGa-CGugCGGGACUGGg -5'
28914 5' -61.3 NC_006146.1 + 161302 0.69 0.565471
Target:  5'- aGCagGAGCugCUuaGCGuggugaagcCCCUGACCCu -3'
miRNA:   3'- gCGg-CUCGugGAcgUGC---------GGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 100203 0.69 0.565471
Target:  5'- uCGCCaGAGaCACCagGCG-GCCCgUGGCCUg -3'
miRNA:   3'- -GCGG-CUC-GUGGa-CGUgCGGG-ACUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.