miRNA display CGI


Results 21 - 40 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28914 5' -61.3 NC_006146.1 + 110906 0.66 0.730053
Target:  5'- gGCCGcguuGGC-CUUGCACuCCaUGACCCc -3'
miRNA:   3'- gCGGC----UCGuGGACGUGcGGgACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 47685 0.66 0.730053
Target:  5'- uCGCCcuguaccAGCugCUGUccacCGCCCUGugCUc -3'
miRNA:   3'- -GCGGc------UCGugGACGu---GCGGGACugGG- -5'
28914 5' -61.3 NC_006146.1 + 145041 0.66 0.730053
Target:  5'- -cCCGGGCAgCgugagcGCGCaGCCCUGGCgCu -3'
miRNA:   3'- gcGGCUCGUgGa-----CGUG-CGGGACUGgG- -5'
28914 5' -61.3 NC_006146.1 + 35961 0.66 0.730053
Target:  5'- -uCCGGGCugACCUGCcguuGCGCag-GGCCCa -3'
miRNA:   3'- gcGGCUCG--UGGACG----UGCGggaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 158406 0.66 0.730053
Target:  5'- uGCaCGAGUACUgcaGCACGUgguagcagcuCUUGACCUg -3'
miRNA:   3'- gCG-GCUCGUGGa--CGUGCG----------GGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 17591 0.66 0.730053
Target:  5'- uGCUGGGCgACCUG---GCCCgGGCCUg -3'
miRNA:   3'- gCGGCUCG-UGGACgugCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 63499 0.66 0.730053
Target:  5'- -cCCGuGCACgCcGCA-GCCCUGgACCCu -3'
miRNA:   3'- gcGGCuCGUG-GaCGUgCGGGAC-UGGG- -5'
28914 5' -61.3 NC_006146.1 + 122673 0.66 0.730053
Target:  5'- cCGCgCG-GCGCUcacccagGCGCGCCa-GGCCCu -3'
miRNA:   3'- -GCG-GCuCGUGGa------CGUGCGGgaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 134172 0.66 0.730053
Target:  5'- aGagGGGgGCCUGCACGCCgaGGuuauuuCCCa -3'
miRNA:   3'- gCggCUCgUGGACGUGCGGgaCU------GGG- -5'
28914 5' -61.3 NC_006146.1 + 74064 0.66 0.729114
Target:  5'- gGCUGaAGCgggcccaACCUGCcCGCCCgucCCCa -3'
miRNA:   3'- gCGGC-UCG-------UGGACGuGCGGGacuGGG- -5'
28914 5' -61.3 NC_006146.1 + 2239 0.66 0.724403
Target:  5'- uCGCCGcGCccCCUcaggccccacccgacGCGCGCUCgGGCCCc -3'
miRNA:   3'- -GCGGCuCGu-GGA---------------CGUGCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 3171 0.66 0.724403
Target:  5'- uCGCCGcGCccCCUcaggccccacccgacGCGCGCUCgGGCCCc -3'
miRNA:   3'- -GCGGCuCGu-GGA---------------CGUGCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 1307 0.66 0.724403
Target:  5'- uCGCCGcGCccCCUcaggccccacccgacGCGCGCUCgGGCCCc -3'
miRNA:   3'- -GCGGCuCGu-GGA---------------CGUGCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 116994 0.66 0.720621
Target:  5'- --aCGAGCGCgUggaGCGgGCCCUGgACCUg -3'
miRNA:   3'- gcgGCUCGUGgA---CGUgCGGGAC-UGGG- -5'
28914 5' -61.3 NC_006146.1 + 57092 0.66 0.720621
Target:  5'- --aCGAGCg---GCGCGUCCUGGCCa -3'
miRNA:   3'- gcgGCUCGuggaCGUGCGGGACUGGg -5'
28914 5' -61.3 NC_006146.1 + 105970 0.66 0.720621
Target:  5'- uGCCGAGC-CCU-CugGCuucucuaacCCUGgaGCCCa -3'
miRNA:   3'- gCGGCUCGuGGAcGugCG---------GGAC--UGGG- -5'
28914 5' -61.3 NC_006146.1 + 15025 0.66 0.720621
Target:  5'- uGCCagggagGGGCGCCUGgccaGgGCCCgccgGGCCUg -3'
miRNA:   3'- gCGG------CUCGUGGACg---UgCGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 39927 0.66 0.720621
Target:  5'- gGUgGgggaAGUAUCUGgGCGCcuCCUGACCCu -3'
miRNA:   3'- gCGgC----UCGUGGACgUGCG--GGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 86545 0.66 0.717778
Target:  5'- aCGCCuAGCACCUugcuguagguguagGCACGCaCCcGACa- -3'
miRNA:   3'- -GCGGcUCGUGGA--------------CGUGCG-GGaCUGgg -5'
28914 5' -61.3 NC_006146.1 + 67890 0.66 0.71112
Target:  5'- gGCCGAG-ACCaGCACGaaCUGGgCCu -3'
miRNA:   3'- gCGGCUCgUGGaCGUGCggGACUgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.