miRNA display CGI


Results 41 - 60 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28914 5' -61.3 NC_006146.1 + 58059 0.66 0.71112
Target:  5'- cCGCCG-GCuACCUGUcgGCCCUGcGCUa -3'
miRNA:   3'- -GCGGCuCG-UGGACGugCGGGAC-UGGg -5'
28914 5' -61.3 NC_006146.1 + 113052 0.66 0.71112
Target:  5'- gGCCucGGGguCCacGUugGCCUUGACCUu -3'
miRNA:   3'- gCGG--CUCguGGa-CGugCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 67890 0.66 0.71112
Target:  5'- gGCCGAG-ACCaGCACGaaCUGGgCCu -3'
miRNA:   3'- gCGGCUCgUGGaCGUGCggGACUgGG- -5'
28914 5' -61.3 NC_006146.1 + 20677 0.66 0.708257
Target:  5'- -uCUGGGCGCCauuuugucuccgcgUGCGCauaauggcgGCCCUGgACCCa -3'
miRNA:   3'- gcGGCUCGUGG--------------ACGUG---------CGGGAC-UGGG- -5'
28914 5' -61.3 NC_006146.1 + 14521 0.66 0.708257
Target:  5'- -uCUGGGCGCCauuuugucuccgcgUGCGCauaauggcgGCCCUGgACCCa -3'
miRNA:   3'- gcGGCUCGUGG--------------ACGUG---------CGGGAC-UGGG- -5'
28914 5' -61.3 NC_006146.1 + 26833 0.66 0.708257
Target:  5'- -uCUGGGCGCCauuuugucuccgcgUGCGCauaauggcgGCCCUGgACCCa -3'
miRNA:   3'- gcGGCUCGUGG--------------ACGUG---------CGGGAC-UGGG- -5'
28914 5' -61.3 NC_006146.1 + 23755 0.66 0.708257
Target:  5'- -uCUGGGCGCCauuuugucuccgcgUGCGCauaauggcgGCCCUGgACCCa -3'
miRNA:   3'- gcGGCUCGUGG--------------ACGUG---------CGGGAC-UGGG- -5'
28914 5' -61.3 NC_006146.1 + 17599 0.66 0.708257
Target:  5'- -uCUGGGCGCCauuuugucuccgcgUGCGCauaauggcgGCCCUGgACCCa -3'
miRNA:   3'- gcGGCUCGUGG--------------ACGUG---------CGGGAC-UGGG- -5'
28914 5' -61.3 NC_006146.1 + 21066 0.66 0.701557
Target:  5'- uCGCCGAgGC-CCUgGC-CGCCCacaccACCCg -3'
miRNA:   3'- -GCGGCU-CGuGGA-CGuGCGGGac---UGGG- -5'
28914 5' -61.3 NC_006146.1 + 16170 0.66 0.701557
Target:  5'- aGCCGAGCGuugucuugCUGCugGCC---GCCCu -3'
miRNA:   3'- gCGGCUCGUg-------GACGugCGGgacUGGG- -5'
28914 5' -61.3 NC_006146.1 + 47198 0.66 0.701557
Target:  5'- cCGCCccGAGCGCCagGC---CCCUGGCCg -3'
miRNA:   3'- -GCGG--CUCGUGGa-CGugcGGGACUGGg -5'
28914 5' -61.3 NC_006146.1 + 142608 0.66 0.701557
Target:  5'- gGuuGAGguCC-GCAUGCCCaauccUGGCCUc -3'
miRNA:   3'- gCggCUCguGGaCGUGCGGG-----ACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 63983 0.66 0.701557
Target:  5'- gGCUGAGguUCUGCugGCuuCCaGuCCCa -3'
miRNA:   3'- gCGGCUCguGGACGugCG--GGaCuGGG- -5'
28914 5' -61.3 NC_006146.1 + 168840 0.66 0.691941
Target:  5'- uCGCgGgGGCACCgGCGCGuggagaagaCCCUucuccGACCCa -3'
miRNA:   3'- -GCGgC-UCGUGGaCGUGC---------GGGA-----CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 127199 0.66 0.691941
Target:  5'- cCGCC-AGgACCUGgACGCCguagUGGCCUu -3'
miRNA:   3'- -GCGGcUCgUGGACgUGCGGg---ACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 169772 0.66 0.691941
Target:  5'- uCGCgGgGGCACCgGCGCGuggagaagaCCCUucuccGACCCa -3'
miRNA:   3'- -GCGgC-UCGUGGaCGUGC---------GGGA-----CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 135372 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 135558 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 135465 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 135279 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.