miRNA display CGI


Results 61 - 80 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28914 5' -61.3 NC_006146.1 + 136208 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 136022 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 135651 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 136580 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 168840 0.66 0.691941
Target:  5'- uCGCgGgGGCACCgGCGCGuggagaagaCCCUucuccGACCCa -3'
miRNA:   3'- -GCGgC-UCGUGGaCGUGC---------GGGA-----CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 167908 0.66 0.691941
Target:  5'- uCGCgGgGGCACCgGCGCGuggagaagaCCCUucuccGACCCa -3'
miRNA:   3'- -GCGgC-UCGUGGaCGUGC---------GGGA-----CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 127602 0.66 0.691941
Target:  5'- gGCCGGGUgagagugacuaACCUGgGCGgCaCCgccGGCCCg -3'
miRNA:   3'- gCGGCUCG-----------UGGACgUGC-G-GGa--CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 14776 0.66 0.691941
Target:  5'- gGCuCGGGCACCUGUugGCggCUGAg-- -3'
miRNA:   3'- gCG-GCUCGUGGACGugCGg-GACUggg -5'
28914 5' -61.3 NC_006146.1 + 157060 0.66 0.691941
Target:  5'- cCGCCGGGguCCcuccgGC-CgGCCUgaugGACCCg -3'
miRNA:   3'- -GCGGCUCguGGa----CGuG-CGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 137230 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 137323 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 136765 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 136673 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 135929 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 135836 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 135743 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 137137 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 169772 0.66 0.691941
Target:  5'- uCGCgGgGGCACCgGCGCGuggagaagaCCCUucuccGACCCa -3'
miRNA:   3'- -GCGgC-UCGUGGaCGUGC---------GGGA-----CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 127391 0.66 0.691941
Target:  5'- gGCCG-GCAgCCUG---GCCCgGACCCu -3'
miRNA:   3'- gCGGCuCGU-GGACgugCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 135186 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.