miRNA display CGI


Results 21 - 40 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28914 5' -61.3 NC_006146.1 + 3166 0.67 0.662851
Target:  5'- gCGCCcugaucGAGCACCUGCGauCUCUGGuuCa -3'
miRNA:   3'- -GCGG------CUCGUGGACGUgcGGGACUggG- -5'
28914 5' -61.3 NC_006146.1 + 3171 0.66 0.724403
Target:  5'- uCGCCGcGCccCCUcaggccccacccgacGCGCGCUCgGGCCCc -3'
miRNA:   3'- -GCGGCuCGu-GGA---------------CGUGCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 3273 0.68 0.603277
Target:  5'- gCGCCGGGC-CCcGCGggaccccccccucCGCCCccgaGGCCCc -3'
miRNA:   3'- -GCGGCUCGuGGaCGU-------------GCGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 3382 0.68 0.594513
Target:  5'- gGCCGGGgGCgCggcccgGCGCcaGCCCUGcCCCc -3'
miRNA:   3'- gCGGCUCgUG-Ga-----CGUG--CGGGACuGGG- -5'
28914 5' -61.3 NC_006146.1 + 3570 0.68 0.575117
Target:  5'- aGCCGAGCGugaCgacgGgACGCCCcgccGGCCCc -3'
miRNA:   3'- gCGGCUCGUg--Ga---CgUGCGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 3626 0.67 0.68228
Target:  5'- cCGCCGGcCAUCcccacGCGCgGCCCcgGGCCCu -3'
miRNA:   3'- -GCGGCUcGUGGa----CGUG-CGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 3648 0.69 0.51705
Target:  5'- uCGCUGAGCuCCUGCcucaccaGCGUUCUGucacACCCc -3'
miRNA:   3'- -GCGGCUCGuGGACG-------UGCGGGAC----UGGG- -5'
28914 5' -61.3 NC_006146.1 + 3831 0.67 0.653099
Target:  5'- gGCgGGGCACCcccGC-UGCCCUaccgGACCUg -3'
miRNA:   3'- gCGgCUCGUGGa--CGuGCGGGA----CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 5611 0.67 0.653099
Target:  5'- gGCCGc-CACCUgGCACuCCUgugUGACCCg -3'
miRNA:   3'- gCGGCucGUGGA-CGUGcGGG---ACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 6495 0.67 0.68228
Target:  5'- gGaCCGGGUggucCUUGgAUGCuCCUGACCCu -3'
miRNA:   3'- gC-GGCUCGu---GGACgUGCG-GGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 8039 0.71 0.41169
Target:  5'- uCGCUG-GCACCcGCugGaCCC-GGCCCu -3'
miRNA:   3'- -GCGGCuCGUGGaCGugC-GGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 8524 0.68 0.61401
Target:  5'- -cCCGGGCGCggGCGCGCCaaggGGCuCCa -3'
miRNA:   3'- gcGGCUCGUGgaCGUGCGGga--CUG-GG- -5'
28914 5' -61.3 NC_006146.1 + 11844 0.68 0.575117
Target:  5'- gCGCCGGGC-CCUGCuucucGgGCUUggggcgGGCCCg -3'
miRNA:   3'- -GCGGCUCGuGGACG-----UgCGGGa-----CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 12094 0.66 0.689047
Target:  5'- gGCCGuGUGCCUGaaCACGCUCUucuucaggcugcggGACCg -3'
miRNA:   3'- gCGGCuCGUGGAC--GUGCGGGA--------------CUGGg -5'
28914 5' -61.3 NC_006146.1 + 12456 0.68 0.623781
Target:  5'- gCGCCGGG-GCCUuuCAgGCCCUcgGGCCCc -3'
miRNA:   3'- -GCGGCUCgUGGAc-GUgCGGGA--CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 12756 0.67 0.633557
Target:  5'- aCGCUGAGCccACCUGUGaccUGCCg-GACCUg -3'
miRNA:   3'- -GCGGCUCG--UGGACGU---GCGGgaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 12921 0.72 0.371545
Target:  5'- aGCCuGGUGCCucUGgAgGCCCUGGCCCc -3'
miRNA:   3'- gCGGcUCGUGG--ACgUgCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 13558 0.69 0.517985
Target:  5'- gCGCCGGGCGCCgggcugcgcaaGCAgGCCgggGGCUCa -3'
miRNA:   3'- -GCGGCUCGUGGa----------CGUgCGGga-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 14167 0.69 0.546312
Target:  5'- aGCUGAGCGUCUGCGCcagGCUg-GACCCc -3'
miRNA:   3'- gCGGCUCGUGGACGUG---CGGgaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 14274 0.69 0.546312
Target:  5'- aGgCGAcagaaugaccGCGCgUGCAgCGCCCUGuCCCu -3'
miRNA:   3'- gCgGCU----------CGUGgACGU-GCGGGACuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.