miRNA display CGI


Results 41 - 60 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28914 5' -61.3 NC_006146.1 + 14521 0.66 0.708257
Target:  5'- -uCUGGGCGCCauuuugucuccgcgUGCGCauaauggcgGCCCUGgACCCa -3'
miRNA:   3'- gcGGCUCGUGG--------------ACGUG---------CGGGAC-UGGG- -5'
28914 5' -61.3 NC_006146.1 + 14776 0.66 0.691941
Target:  5'- gGCuCGGGCACCUGUugGCggCUGAg-- -3'
miRNA:   3'- gCG-GCUCGUGGACGugCGg-GACUggg -5'
28914 5' -61.3 NC_006146.1 + 15025 0.66 0.720621
Target:  5'- uGCCagggagGGGCGCCUGgccaGgGCCCgccgGGCCUg -3'
miRNA:   3'- gCGG------CUCGUGGACg---UgCGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 15535 0.68 0.623781
Target:  5'- gCGCCGGG-GCCUuuCAgGCCCUcgGGCCCc -3'
miRNA:   3'- -GCGGCUCgUGGAc-GUgCGGGA--CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 15660 1.11 0.000768
Target:  5'- gCGCCGAGCACCUGCACGCCCUGACCCa -3'
miRNA:   3'- -GCGGCUCGUGGACGUGCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 15743 0.67 0.672581
Target:  5'- cCGCCcAGCAac-GUG-GCCCUGGCCCg -3'
miRNA:   3'- -GCGGcUCGUggaCGUgCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 15923 0.75 0.255944
Target:  5'- uGCCGGGC-CCUGCGCgagGCCgugCUGACCg -3'
miRNA:   3'- gCGGCUCGuGGACGUG---CGG---GACUGGg -5'
28914 5' -61.3 NC_006146.1 + 15998 0.72 0.371545
Target:  5'- aGCCuGGUGCCucUGgAgGCCCUGGCCCc -3'
miRNA:   3'- gCGGcUCGUGG--ACgUgCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 16170 0.66 0.701557
Target:  5'- aGCCGAGCGuugucuugCUGCugGCC---GCCCu -3'
miRNA:   3'- gCGGCUCGUg-------GACGugCGGgacUGGG- -5'
28914 5' -61.3 NC_006146.1 + 17591 0.66 0.730053
Target:  5'- uGCUGGGCgACCUG---GCCCgGGCCUg -3'
miRNA:   3'- gCGGCUCG-UGGACgugCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 17599 0.66 0.708257
Target:  5'- -uCUGGGCGCCauuuugucuccgcgUGCGCauaauggcgGCCCUGgACCCa -3'
miRNA:   3'- gcGGCUCGUGG--------------ACGUG---------CGGGAC-UGGG- -5'
28914 5' -61.3 NC_006146.1 + 18613 0.68 0.623781
Target:  5'- gCGCCGGG-GCCUuuCAgGCCCUcgGGCCCc -3'
miRNA:   3'- -GCGGCUCgUGGAc-GUgCGGGA--CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 19076 0.72 0.371545
Target:  5'- aGCCuGGUGCCucUGgAgGCCCUGGCCCc -3'
miRNA:   3'- gCGGcUCGUGG--ACgUgCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 20677 0.66 0.708257
Target:  5'- -uCUGGGCGCCauuuugucuccgcgUGCGCauaauggcgGCCCUGgACCCa -3'
miRNA:   3'- gcGGCUCGUGG--------------ACGUG---------CGGGAC-UGGG- -5'
28914 5' -61.3 NC_006146.1 + 20915 0.81 0.107086
Target:  5'- gGCCcuGAGUccggccgACCUGCAgGCCCUGGCCCc -3'
miRNA:   3'- gCGG--CUCG-------UGGACGUgCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 21066 0.66 0.701557
Target:  5'- uCGCCGAgGC-CCUgGC-CGCCCacaccACCCg -3'
miRNA:   3'- -GCGGCU-CGuGGA-CGuGCGGGac---UGGG- -5'
28914 5' -61.3 NC_006146.1 + 21691 0.68 0.623781
Target:  5'- gCGCCGGG-GCCUuuCAgGCCCUcgGGCCCc -3'
miRNA:   3'- -GCGGCUCgUGGAc-GUgCGGGA--CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 22154 0.72 0.371545
Target:  5'- aGCCuGGUGCCucUGgAgGCCCUGGCCCc -3'
miRNA:   3'- gCGGcUCGUGG--ACgUgCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 23755 0.66 0.708257
Target:  5'- -uCUGGGCGCCauuuugucuccgcgUGCGCauaauggcgGCCCUGgACCCa -3'
miRNA:   3'- gcGGCUCGUGG--------------ACGUG---------CGGGAC-UGGG- -5'
28914 5' -61.3 NC_006146.1 + 23771 0.79 0.148226
Target:  5'- gGCCGAGaauggcgGCCUGCGCGUCUggGGCCCg -3'
miRNA:   3'- gCGGCUCg------UGGACGUGCGGGa-CUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.