miRNA display CGI


Results 61 - 80 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28914 5' -61.3 NC_006146.1 + 23802 0.67 0.642355
Target:  5'- nCGCUGAGCcCCaGCuCGCCCacuucucucucccUGGCCUu -3'
miRNA:   3'- -GCGGCUCGuGGaCGuGCGGG-------------ACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 24769 0.68 0.623781
Target:  5'- gCGCCGGG-GCCUuuCAgGCCCUcgGGCCCc -3'
miRNA:   3'- -GCGGCUCgUGGAc-GUgCGGGA--CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 25232 0.72 0.371545
Target:  5'- aGCCuGGUGCCucUGgAgGCCCUGGCCCc -3'
miRNA:   3'- gCGGcUCGUGG--ACgUgCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 26833 0.66 0.708257
Target:  5'- -uCUGGGCGCCauuuugucuccgcgUGCGCauaauggcgGCCCUGgACCCa -3'
miRNA:   3'- gcGGCUCGUGG--------------ACGUG---------CGGGAC-UGGG- -5'
28914 5' -61.3 NC_006146.1 + 27035 0.68 0.604252
Target:  5'- gGCCGAGCACaucgAUGCCCgu-CCCa -3'
miRNA:   3'- gCGGCUCGUGgacgUGCGGGacuGGG- -5'
28914 5' -61.3 NC_006146.1 + 27847 0.68 0.623781
Target:  5'- gCGCCGGG-GCCUuuCAgGCCCUcgGGCCCc -3'
miRNA:   3'- -GCGGCUCgUGGAc-GUgCGGGA--CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 28310 0.72 0.371545
Target:  5'- aGCCuGGUGCCucUGgAgGCCCUGGCCCc -3'
miRNA:   3'- gCGGcUCGUGG--ACgUgCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 33169 0.7 0.499427
Target:  5'- gGCUGGGCACCgccGCGCcgccgcucgGUCCUGGgCCu -3'
miRNA:   3'- gCGGCUCGUGGa--CGUG---------CGGGACUgGG- -5'
28914 5' -61.3 NC_006146.1 + 33254 0.68 0.594513
Target:  5'- cCGCCGGGC-CgCUGCccCGCUCcggguggggggUGGCCCg -3'
miRNA:   3'- -GCGGCUCGuG-GACGu-GCGGG-----------ACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 33293 0.67 0.662851
Target:  5'- gGCUGGGCACCgcUGCGcCGCCgCUcGGuCCUg -3'
miRNA:   3'- gCGGCUCGUGG--ACGU-GCGG-GA-CU-GGG- -5'
28914 5' -61.3 NC_006146.1 + 33376 0.68 0.594513
Target:  5'- cCGCCGGGC-CgCUGCccCGCUCcggguggggggUGGCCCg -3'
miRNA:   3'- -GCGGCUCGuG-GACGu-GCGGG-----------ACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 35030 0.69 0.527366
Target:  5'- aCGcCCGGGUcaugACCUGUcacuCGCCUUGuCCCg -3'
miRNA:   3'- -GC-GGCUCG----UGGACGu---GCGGGACuGGG- -5'
28914 5' -61.3 NC_006146.1 + 35961 0.66 0.730053
Target:  5'- -uCCGGGCugACCUGCcguuGCGCag-GGCCCa -3'
miRNA:   3'- gcGGCUCG--UGGACG----UGCGggaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 38115 0.7 0.490259
Target:  5'- uGCUGAGCAgCUGCGaGCCUgcagcGACCg -3'
miRNA:   3'- gCGGCUCGUgGACGUgCGGGa----CUGGg -5'
28914 5' -61.3 NC_006146.1 + 39927 0.66 0.720621
Target:  5'- gGUgGgggaAGUAUCUGgGCGCcuCCUGACCCu -3'
miRNA:   3'- gCGgC----UCGUGGACgUGCG--GGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 39983 0.68 0.623781
Target:  5'- gGCUGAgGCugCUGCG-GCCCguagUGGCCg -3'
miRNA:   3'- gCGGCU-CGugGACGUgCGGG----ACUGGg -5'
28914 5' -61.3 NC_006146.1 + 41269 0.68 0.623781
Target:  5'- gGCgGAGCAC----GCGCCCgcggagGACCCg -3'
miRNA:   3'- gCGgCUCGUGgacgUGCGGGa-----CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 41588 0.69 0.53681
Target:  5'- gCGaggaCGAGCucagguuCCUGCACcuguCCCUGACCa -3'
miRNA:   3'- -GCg---GCUCGu------GGACGUGc---GGGACUGGg -5'
28914 5' -61.3 NC_006146.1 + 41622 0.7 0.455293
Target:  5'- cCGCUGGGC-CCggGCGCagaccagccccacauCCCUGACCCu -3'
miRNA:   3'- -GCGGCUCGuGGa-CGUGc--------------GGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 41770 0.72 0.395311
Target:  5'- cCGCCGgaGGC-CCUGCgcccggGCGCCCgcucucaGGCCCu -3'
miRNA:   3'- -GCGGC--UCGuGGACG------UGCGGGa------CUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.